Reconstruction/VKalVrt/VrtSecInclusive/src/Utilities.cxx

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/*
  Copyright (C) 2002-2025 CERN for the benefit of the ATLAS collaboration
*/
 
// Header include
#include "VrtSecInclusive/VrtSecInclusive.h"
#include "VrtSecInclusive/IntersectionPos.h"
#include "VrtSecInclusive/NtupleVars.h"
 
#include "TrkTrackSummary/TrackSummary.h"
 
#include <xAODEventInfo/EventInfo.h>
#include <xAODTruth/TruthParticleContainer.h>
#include <xAODTruth/TruthVertexContainer.h>
#include "xAODEgamma/ElectronxAODHelpers.h"
 
#include "TH1D.h"
#include "TNtuple.h"
#include "TTree.h"
#include "TROOT.h"
 
#include <iostream>
#include <map>
#include <vector>
#include <deque>
 
//-------------------------------------------------
 
using namespace std;
 
namespace VKalVrtAthena {
 
  //____________________________________________________________________________________________________
  bool isAssociatedToVertices( const xAOD::TrackParticle *trk, const xAOD::VertexContainer* vertices ) {
 
      bool is_pv_associated = false;
      const xAOD::TrackParticle *trk_from_gsf;
      // get ID track matched to GSF track
      trk_from_gsf = xAOD::EgammaHelpers::getOriginalTrackParticleFromGSF(trk);
      for( const auto* vtx : *vertices ) {
        for( size_t iv = 0; iv < vtx->nTrackParticles(); iv++ ) {
          const auto* pvtrk = vtx->trackParticle( iv );
          if (pvtrk == nullptr) continue;
          // when using lepton-only selection, also need to check if the ID track matched to the GSF track is associated to the PV
           if ( (trk_from_gsf == pvtrk) or (trk == pvtrk) ) {
            is_pv_associated = true;
            break;
          }
        }
      }
      return is_pv_associated;
  }
 
  //____________________________________________________________________________________________________
  double vtxVtxDistance( const Amg::Vector3D& v1, const Amg::Vector3D& v2 ) {
    return (v1-v2).norm();
  }
 
 
  //____________________________________________________________________________________________________
  double VrtSecInclusive::significanceBetweenVertices( const WrkVrt& v1, const WrkVrt& v2 ) const {
    try {
      const auto distance = v2.vertex - v1.vertex;
      AmgSymMatrix(3) sumCov;
 
      sumCov.fillSymmetric(0, 0, v1.vertexCov.at(0) + v2.vertexCov.at(0));
      sumCov.fillSymmetric(1, 0, v1.vertexCov.at(1) + v2.vertexCov.at(1));
      sumCov.fillSymmetric(1, 1, v1.vertexCov.at(2) + v2.vertexCov.at(2));
      sumCov.fillSymmetric(2, 0, v1.vertexCov.at(3) + v2.vertexCov.at(3));
      sumCov.fillSymmetric(2, 1, v1.vertexCov.at(4) + v2.vertexCov.at(4));
      sumCov.fillSymmetric(2, 2, v1.vertexCov.at(5) + v2.vertexCov.at(5));
 
      const double s2 = distance.transpose() * sumCov.inverse() * distance;
 
      return s2 > 0. ? sqrt( s2 ) : AlgConsts::maxValue;
    } catch(...) {
      ATH_MSG_WARNING( " >>> " << __FUNCTION__ << ": detected covariance matrix broken exception" );
      return AlgConsts::maxValue;
    }
  }
 
  //____________________________________________________________________________________________________
  template<>
  void genSequence( const xAOD::Muon*, std::vector<unsigned>& trackTypes ) {
    trackTypes = { xAOD::Muon::Primary,
                   xAOD::Muon::InnerDetectorTrackParticle,
                   xAOD::Muon::MuonSpectrometerTrackParticle,
                   xAOD::Muon::CombinedTrackParticle,
                   xAOD::Muon::ExtrapolatedMuonSpectrometerTrackParticle
    };
  }
 
  template<>
  void genSequence( const xAOD::Electron* electron, std::vector<unsigned>& trackTypes ) {
    for( size_t i=0; i<electron->nTrackParticles(); i++ ) trackTypes.emplace_back( i );
  }
 
 
  //____________________________________________________________________________________________________
  template<>
  const xAOD::TrackParticle* getLeptonTrackParticle( const xAOD::Muon* muon, const unsigned& trackType ) {
    return muon->trackParticle( static_cast<xAOD::Muon::TrackParticleType>( trackType ) );
  }
 
  template<>
  const xAOD::TrackParticle* getLeptonTrackParticle( const xAOD::Electron* electron, const unsigned& trackType ) {
    return electron->trackParticle( trackType );
  }
 
 
  //____________________________________________________________________________________________________
  double VrtSecInclusive::distanceBetweenVertices( const WrkVrt& v1, const WrkVrt& v2 ) const {
    return (v2.vertex - v1.vertex).norm();
  }
 
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::disassembleVertex(std::vector<WrkVrt> *workVerticesContainer, const unsigned& iv )
  {
 
    auto& wrkvrt = workVerticesContainer->at(iv);
 
    ATH_MSG_VERBOSE(" >> disassembleVertex(): begin: disassembling vertex[" << iv << "], workVerticesContainer.size() = " << workVerticesContainer->size() );
    ATH_MSG_VERBOSE(" >> disassembleVertex(): Vertex: r = " << wrkvrt.vertex.perp() << ", z = " << wrkvrt.vertex.z() );
 
    // Loop over the tracks associated to the vertex and slect the maximum chi2 track
    const auto& ntrk = wrkvrt.selectedTrackIndices.size();
    size_t maxChi2TrackIndex       = AlgConsts::invalidUnsigned;
 
    // If the size of the tracks is less than 2, this algorithm is meaningless.
    if( wrkvrt.selectedTrackIndices.size() <= 2 ) return StatusCode::SUCCESS;
 
    for( auto& index : wrkvrt.selectedTrackIndices ) {
      const xAOD::TrackParticle* trk = m_selectedTracks.at( index );
 
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > track at vertex[" << iv << "]: "
          << "index = " << trk->index()
          << ", pT = "  << trk->pt()
          << ", phi = " << trk->phi()
          << ", d0 = "  << trk->d0()
          << ", z0 = "  << trk->z0());
    }
 
    // find the track with the maximum chi2
    const auto& max = std::max_element( wrkvrt.Chi2PerTrk.begin(), wrkvrt.Chi2PerTrk.end() );
 
    if( max == wrkvrt.Chi2PerTrk.end() ) return StatusCode::SUCCESS;
 
    maxChi2TrackIndex = max - wrkvrt.Chi2PerTrk.begin();
 
    // return if no track is found.
    if(maxChi2TrackIndex == AlgConsts::invalidUnsigned ) return StatusCode::SUCCESS;
 
 
    // define work variables
    vector<const xAOD::NeutralParticle*>  dummyNeutrals;
 
    vector<WrkVrt> new_vertices;
 
    // Loop over the tracks associated to the vertex other than the selected tracks
    ATH_MSG_VERBOSE(" >> disassembleVertex(): Loop over the tracks associated to the vertex other than the selected tracks.");
    for(size_t itrk=0; itrk<ntrk; itrk++) {
 
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > Loop itrk = " << itrk << " / " << ntrk );
 
      // reject the selected track
      if( itrk == maxChi2TrackIndex ) {
  ATH_MSG_VERBOSE(" >> disassembleVertex(): > skipped." );
  continue;
      }
 
      const size_t this_trk_id     = wrkvrt.selectedTrackIndices[itrk];
      const size_t selected_trk_id = wrkvrt.selectedTrackIndices[maxChi2TrackIndex];
 
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > this_trk_id  = " << this_trk_id << ", selected_trk_id = " << selected_trk_id << ", alltrks_size = " << m_selectedTracks.size() );
      if( this_trk_id >= m_selectedTracks.size() ) {
  ATH_MSG_VERBOSE(" >> disassembleVertex(): > this_trk_id is invalid. continue!" );
  continue;
      }
      if( selected_trk_id >= m_selectedTracks.size() ) {
  ATH_MSG_VERBOSE(" >> disassembleVertex(): > selected_trk_id is invalid. continue!" );
  continue;
      }
 
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > Storing tracks to ListBaseTracks" );
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > m_selectedTracks.at( this_trk_id ) = " << m_selectedTracks.at( this_trk_id     )->index() );
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > m_selectedTracks.at( this_trk_id ) = " << m_selectedTracks.at( selected_trk_id )->index() );
 
      vector<const xAOD::TrackParticle*>    ListBaseTracks;
      ListBaseTracks.emplace_back( m_selectedTracks.at( this_trk_id     ) );
      ListBaseTracks.emplace_back( m_selectedTracks.at( selected_trk_id ) );
 
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > ListBaseTracks was stored." );
 
      WrkVrt newvrt;
      newvrt.selectedTrackIndices.emplace_back( this_trk_id );
      newvrt.selectedTrackIndices.emplace_back( selected_trk_id );
 
      // Fit the new vertex
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > Fast Fit" );
 
      std::unique_ptr<Trk::IVKalState> state = m_fitSvc->makeState();
      ATH_CHECK( m_fitSvc->VKalVrtFitFast( ListBaseTracks, newvrt.vertex, *state ) );
 
      ATH_MSG_VERBOSE( " >> disassembleVertex(): > ApproxVertex: r = " << newvrt.vertex.perp() << ", z = " << newvrt.vertex.z() );
 
      if( vtxVtxDistance( wrkvrt.vertex, newvrt.vertex ) > 10. )
        {
          m_fitSvc->setApproximateVertex( wrkvrt.vertex[0], wrkvrt.vertex[1], wrkvrt.vertex[2], *state );
        }
      else
        {
          m_fitSvc->setApproximateVertex( newvrt.vertex[0], newvrt.vertex[1], newvrt.vertex[2], *state );
        }
 
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > Fit the new vertex" );
      StatusCode sc = m_fitSvc->VKalVrtFit(ListBaseTracks,
                                           dummyNeutrals,
                                           newvrt.vertex,
                                           newvrt.vertexMom,
                                           newvrt.Charge,
                                           newvrt.vertexCov,
                                           newvrt.Chi2PerTrk,
                                           newvrt.TrkAtVrt,
                                           newvrt.Chi2,
                                           *state);
 
      if( sc.isFailure() ) continue;
 
      newvrt.closestWrkVrtIndex    = 0;
      newvrt.closestWrkVrtValue    = AlgConsts::maxValue;
 
      // register the new vertex to the vertex list
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > register the new vertex to the vertex list" );
      new_vertices.emplace_back( newvrt );
    }
 
    // remove the selected track from the original vertex
    wrkvrt.selectedTrackIndices.erase( wrkvrt.selectedTrackIndices.begin() + maxChi2TrackIndex ); //remove track
    ATH_MSG_VERBOSE(" >> disassembleVertex(): removed the selected track from the original vertex. wrkvrt.selectedTrackIndices.size = " << wrkvrt.selectedTrackIndices.size() );
 
    // refit the original vertex
    ATH_MSG_VERBOSE(" >> disassembleVertex(): refit the original vertex" );
 
    StatusCode sc = refitVertex( wrkvrt );
    if( sc.isFailure() ) {
        // WARNING CODE ATLASRECTS-3145::001 refitVertex Failure, vertex lost
        ATH_MSG_WARNING("ATLASRECTS-3145::001" );
        return StatusCode::SUCCESS;
    }
    // end of workaround
 
    for( const auto& vertex : new_vertices ) {
      ATH_MSG_VERBOSE(" >> disassembleVertex(): > emplace_back new vertex" );
      workVerticesContainer->emplace_back( vertex );
    }
 
    ATH_MSG_VERBOSE(" >> disassembleVertex(): end. workVerticesContainer.size() = " << workVerticesContainer->size() );
    return StatusCode::SUCCESS;
  }
 
 
 
  //____________________________________________________________________________________________________
  double  VrtSecInclusive::improveVertexChi2( WrkVrt& vertex )
  {
    //
    //  Iterate track removal until vertex get good Chi2
    //
 
    auto fitQuality_begin = vertex.fitQuality();
 
    auto removeCounter = 0;
 
    if( vertex.nTracksTotal() <= 2 ) return 0.;
 
    {
      WrkVrt backup = vertex;
      StatusCode sc = refitVertexWithSuggestion( vertex, vertex.vertex );
      if( sc.isFailure() ) {
        vertex = backup;
        return 0;
      }
    }
 
    double chi2Probability = TMath::Prob( vertex.Chi2, vertex.ndof() );
 
    while (chi2Probability < m_jp.improveChi2ProbThreshold ) {
      if( vertex.nTracksTotal() == 2 ) return chi2Probability;
 
      WrkVrt vertex_backup = vertex;
 
      auto maxChi2 = std::max_element( vertex.Chi2PerTrk.begin(), vertex.Chi2PerTrk.end() );
      size_t index   = maxChi2 - vertex.Chi2PerTrk.begin();
 
 
      ATH_MSG_DEBUG( " >>> " << __FUNCTION__ << ": worst chi2 trk index = " << index << ", #trks = " << vertex.Chi2PerTrk.size() );
 
      if( index < vertex.selectedTrackIndices.size() ) {
        vertex.selectedTrackIndices.erase( vertex.selectedTrackIndices.begin() + index ); //remove track
        removeCounter++;
      } else {
        index -= vertex.selectedTrackIndices.size();
        if( index >= vertex.associatedTrackIndices.size() ) {
          ATH_MSG_WARNING( " >>> " << __FUNCTION__ << ": invalid index" );
          break;
        }
        vertex.associatedTrackIndices.erase( vertex.associatedTrackIndices.begin() + index ); //remove track
        removeCounter++;
      }
 
      StatusCode sc = refitVertexWithSuggestion( vertex, vertex.vertex );
 
      if( sc.isFailure() || vertex_backup.fitQuality() < vertex.fitQuality() ) {
        vertex = vertex_backup;
        chi2Probability = 0;
        break;
      }
 
      chi2Probability = TMath::Prob( vertex.Chi2, vertex.ndof() );
    }
 
    auto fitQuality_end = vertex.fitQuality();
 
    if( 0 == removeCounter ) {
      ATH_MSG_DEBUG( " >>> " << __FUNCTION__ << ": no improvement was found." );
    } else {
      ATH_MSG_DEBUG( " >>> " << __FUNCTION__ << ": Removed " << removeCounter << " tracks; Fit quality improvement: " << fitQuality_begin << " ==> " << fitQuality_end );
    }
 
    return chi2Probability;
  }
 
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::removeTrackFromVertex(std::vector<WrkVrt> *workVerticesContainer,
                std::vector< std::deque<long int> > *TrkInVrt,
                const long int & trackIndexToRemove,
                const long int & SelectedVertex)
  {
 
    auto& wrkvrt = workVerticesContainer->at(SelectedVertex);
    auto& tracks = wrkvrt.selectedTrackIndices;
 
    {
      auto end = std::remove_if( tracks.begin(), tracks.end(), [&](long int index) { return index == trackIndexToRemove; } );
      tracks.erase( end, tracks.end() );
    }
 
    {
      for( auto& trks : *TrkInVrt ) {
        auto end = std::remove_if( trks.begin(), trks.end(), [&](long int index) { return index == trackIndexToRemove; } );
        trks.erase( end, trks.end() );
      }
    }
 
 
    // Check if track is removed from two-track vertex => then sharing of track left should also be decreased
    if( wrkvrt.selectedTrackIndices.size() == 1 ) {
 
      const auto& leftTrackIndex = *( tracks.begin() );
      auto& list = TrkInVrt->at(leftTrackIndex);
      auto end = std::remove_if( list.begin(), list.end(), [&](long int index) { return index == trackIndexToRemove; } );
      list.erase( end, list.end() );
 
    }
 
  }
 
 
 
  //____________________________________________________________________________________________________
  double VrtSecInclusive::findMinVerticesPair( std::vector<WrkVrt> *workVerticesContainer, std::pair<unsigned, unsigned>& indexPair, const VrtSecInclusive::AlgForVerticesPair& algorithm )
  {
    //
    //  Minimal normalized vertex-vertex distance
    //
 
    for( auto& workVertex : *workVerticesContainer ) {
      workVertex.closestWrkVrtValue = AlgConsts::maxValue;
      workVertex.closestWrkVrtIndex = 0;
    }
 
    double minValue = AlgConsts::maxValue;
 
    for( auto iv = workVerticesContainer->begin(); iv != workVerticesContainer->end(); ++iv ) {
      if( (*iv).selectedTrackIndices.size()< 2) continue;   /* Bad vertices */
 
      auto i_index = iv - workVerticesContainer->begin();
 
      for( auto jv = std::next(iv); jv != workVerticesContainer->end(); ++jv ) {
        if( (*jv).selectedTrackIndices.size()< 2) continue;   /* Bad vertices */
 
        auto j_index = iv - workVerticesContainer->begin();
 
        double value = (this->*algorithm)( (*iv), (*jv) );
 
        if( value < minValue ){
          minValue = value;
          indexPair.first  = i_index;
          indexPair.second = j_index;
        }
        if( value < (*iv).closestWrkVrtValue ) {(*iv).closestWrkVrtValue = value; (*iv).closestWrkVrtIndex = j_index; }
        if( value < (*jv).closestWrkVrtValue ) {(*jv).closestWrkVrtValue = value; (*jv).closestWrkVrtIndex = i_index; }
      }
    }
 
    return minValue;
  }
 
 
  //____________________________________________________________________________________________________
  double VrtSecInclusive::findMinVerticesNextPair( std::vector<WrkVrt> *workVerticesContainer, std::pair<unsigned, unsigned>& indexPair )
  {
    //
    // Give minimal distance between nonmodifed yet vertices
    //
 
    indexPair.first = 0;
    indexPair.second = 0;
 
    double minValue = AlgConsts::maxValue;
 
    for(unsigned iv=0; iv<workVerticesContainer->size()-1; iv++) {
      auto& vertex = workVerticesContainer->at(iv);
 
      if( vertex.selectedTrackIndices.size() < 2) continue;   /* Bad vertex */
      if( vertex.closestWrkVrtIndex == 0 )        continue;   /* Used vertex */
 
      if( vertex.closestWrkVrtValue < minValue ) {
 
        unsigned jv = vertex.closestWrkVrtIndex;
 
        // Close vertex to given [iv] one is modified already
        if( workVerticesContainer->at(jv).closestWrkVrtIndex == 0 ) continue;
 
        minValue = vertex.closestWrkVrtValue;
 
        indexPair.first  = iv;
        indexPair.second = jv;
 
      }
    }
 
    return minValue;
  }
 
 
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::mergeVertices( WrkVrt& v1, WrkVrt& v2 )
  {
    //
    //  Merge two close vertices into one (first) and set NTr=0 for second vertex
    //
 
    // firstly, take a backup of the original vertices
    auto v1_bak = v1;
    auto v2_bak = v2;
 
    for( auto& index : v2.selectedTrackIndices ) { v1.selectedTrackIndices.emplace_back( index ); }
 
    // Cleaning
    deque<long int>::iterator TransfEnd;
    sort( v1.selectedTrackIndices.begin(), v1.selectedTrackIndices.end() );
    TransfEnd =  unique(v1.selectedTrackIndices.begin(), v1.selectedTrackIndices.end() );
    v1.selectedTrackIndices.erase( TransfEnd, v1.selectedTrackIndices.end());
    //
    //----------------------------------------------------------
    v2.selectedTrackIndices.clear();             //Clean dropped vertex
    v2.closestWrkVrtValue = AlgConsts::maxValue; //Clean dropped vertex
    v2.closestWrkVrtIndex = 0;                   //Clean dropped vertex
    v2.isGood = false;                           //Clean dropped vertex
 
    v1.closestWrkVrtValue = AlgConsts::maxValue; //Clean new vertex
    v1.closestWrkVrtIndex = 0;                   //Clean new vertex
    v1.isGood = true;                            //Clean new vertex
 
    StatusCode sc = refitVertex( v1 );
    if( sc.isFailure() ) {
      v1 = v1_bak;
      v2 = v2_bak;
 
      ATH_MSG_DEBUG(" >>> " << __FUNCTION__ << ": failure in merging" );
 
      return StatusCode::FAILURE;
    }
 
    return StatusCode::SUCCESS;
  }
 
 
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::refitVertex( WrkVrt& workVertex )
  {
    std::unique_ptr<Trk::IVKalState> state = m_fitSvc->makeState();
    return refitVertex (workVertex, *state);
  }
 
 
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::refitVertex( WrkVrt& workVertex,
                                           Trk::IVKalState& istate)
  {
 
    //
    vector<const xAOD::NeutralParticle*> dummyNeutrals;
 
    int nth = workVertex.selectedTrackIndices.size();
 
    if(nth<2) {
      workVertex.isGood = false;
      return StatusCode::SUCCESS;
    }
 
    vector<const xAOD::TrackParticle*>  ListBaseTracks;
 
    workVertex.Chi2PerTrk.clear();
 
    for( const auto& index : workVertex.selectedTrackIndices ) {
      ListBaseTracks.emplace_back( m_selectedTracks.at( index ) );
      workVertex.Chi2PerTrk.emplace_back( AlgConsts::chi2PerTrackInitValue );
    }
 
    for( const auto& index : workVertex.associatedTrackIndices ) {
      ListBaseTracks.emplace_back( m_associatedTracks.at( index ) );
      workVertex.Chi2PerTrk.emplace_back( AlgConsts::chi2PerTrackInitValue );
    }
 
    auto& vertexPos = workVertex.vertex;
 
    m_fitSvc->setApproximateVertex( vertexPos.x(), vertexPos.y(), vertexPos.z(), istate );
 
    ATH_MSG_VERBOSE( " >>> refitVertex: ListBaseTracks.size = " << ListBaseTracks.size()
                   << ", #selectedBaseTracks = " << workVertex.selectedTrackIndices.size()
                   << ", #assocTracks = " << workVertex.associatedTrackIndices.size() );
    for( const auto *trk : ListBaseTracks ) {
      ATH_MSG_VERBOSE( " >>> refitVertex: track index = " << trk->index() );
    }
 
    ATH_MSG_VERBOSE( " >>> refitVertex: m_fitSvc is reset." );
 
    Amg::Vector3D initVertex;
 
    StatusCode sc = m_fitSvc->VKalVrtFitFast( ListBaseTracks, initVertex, istate );/* Fast crude estimation */
    if(sc.isFailure()) ATH_MSG_DEBUG(" >>> refitVertex: fast crude estimation failed.");
    ATH_MSG_VERBOSE( " >>> refitVertex: Fast VKalVrtFit succeeded. vertex (r,z) = (" << initVertex.perp() << ", " << initVertex.z() << ", " << ")" );
 
    if( vtxVtxDistance( initVertex, vertexPos ) > 10. ) {
 
      m_fitSvc->setApproximateVertex( vertexPos.x(), vertexPos.y(), vertexPos.z(), istate );
 
    } else {
 
      m_fitSvc->setApproximateVertex( initVertex.x(), initVertex.y(), initVertex.z(), istate );
 
    }
 
    ATH_MSG_VERBOSE( " >>> refitVertex: approx vertex is set. Now going to perform fitting..." );
 
    StatusCode SC=m_fitSvc->VKalVrtFit(ListBaseTracks,dummyNeutrals,
               workVertex.vertex,
               workVertex.vertexMom,
               workVertex.Charge,
               workVertex.vertexCov,
               workVertex.Chi2PerTrk,
               workVertex.TrkAtVrt,
               workVertex.Chi2,
               istate);
 
    auto& cov = workVertex.vertexCov;
 
    if(SC.isFailure()) ATH_MSG_DEBUG(" >>> refitVertex: SC in refitVertex returned failure ");
    ATH_MSG_VERBOSE(" >>> refitVertex "<<SC<<", "<<ListBaseTracks.size()<<","<<workVertex.Chi2PerTrk.size());
    ATH_MSG_VERBOSE( " >>> refitVertex: succeeded in fitting. New vertex pos (r,z) = (" << vertexPos.perp() << ", " << vertexPos.z() << ")" );
    ATH_MSG_VERBOSE( " >>> refitVertex: New vertex cov = (" << cov.at(0) << ", " << cov.at(1) << ", " << cov.at(2) << ", " << cov.at(3) << ", " << cov.at(4) << ", " << cov.at(5) << ")" );
 
    return SC;
  }
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::refitVertexWithSuggestion( WrkVrt& workVertex, const Amg::Vector3D& suggestedPosition )
  {
    std::unique_ptr<Trk::IVKalState> state = m_fitSvc->makeState();
    return refitVertexWithSuggestion (workVertex, suggestedPosition, *state);
  }
 
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::refitVertexWithSuggestion( WrkVrt& workVertex,
                                                         const Amg::Vector3D& suggestedPosition,
                                                         Trk::IVKalState& istate )
  {
 
    //
    vector<const xAOD::NeutralParticle*> dummyNeutrals;
 
    int nth = workVertex.selectedTrackIndices.size();
 
    if(nth<2) {
      workVertex.isGood = false;
      return StatusCode::SUCCESS;
    }
 
    vector<const xAOD::TrackParticle*>  ListBaseTracks;
 
    workVertex.Chi2PerTrk.clear();
 
    for( const auto& index : workVertex.selectedTrackIndices ) {
      ListBaseTracks.emplace_back( m_selectedTracks.at( index ) );
      workVertex.Chi2PerTrk.emplace_back( AlgConsts::chi2PerTrackInitValue );
    }
 
    for( const auto& index : workVertex.associatedTrackIndices ) {
      ListBaseTracks.emplace_back( m_associatedTracks.at( index ) );
      workVertex.Chi2PerTrk.emplace_back( AlgConsts::chi2PerTrackInitValue );
    }
 
    auto& vertexPos = workVertex.vertex;
 
    m_fitSvc->setApproximateVertex( suggestedPosition.x(), suggestedPosition.y(), suggestedPosition.z(), istate );
 
    ATH_MSG_VERBOSE( " >>> " << __FUNCTION__ <<": ListBaseTracks.size = " << ListBaseTracks.size()
                   << ", #selectedBaseTracks = " << workVertex.selectedTrackIndices.size()
                   << ", #assocTracks = " << workVertex.associatedTrackIndices.size() );
    for( const auto *trk : ListBaseTracks ) {
      ATH_MSG_VERBOSE( " >>> " << __FUNCTION__ << ": track index = " << trk->index() );
    }
 
    ATH_MSG_VERBOSE( " >>> " << __FUNCTION__ << ": m_fitSvc is reset." );
 
    ATH_MSG_VERBOSE( " >>> " << __FUNCTION__ << ": approx vertex is set. Now going to perform fitting..." );
 
    StatusCode SC=m_fitSvc->VKalVrtFit(ListBaseTracks,dummyNeutrals,
               workVertex.vertex,
               workVertex.vertexMom,
               workVertex.Charge,
               workVertex.vertexCov,
               workVertex.Chi2PerTrk,
               workVertex.TrkAtVrt,
               workVertex.Chi2,
               istate);
 
    auto& cov = workVertex.vertexCov;
 
    if( SC.isFailure() ) ATH_MSG_VERBOSE(" >>> " << __FUNCTION__ << ": SC in refitVertex returned failure ");
    ATH_MSG_VERBOSE(" >>> " << __FUNCTION__ << ": "<<SC<<", "<<ListBaseTracks.size()<<","<<workVertex.Chi2PerTrk.size());
 
    if( SC.isSuccess() ) {
      ATH_MSG_VERBOSE( " >>> " << __FUNCTION__ << ": succeeded in fitting. New vertex pos = (" << vertexPos.x() << ", " << vertexPos.y() << ", " << vertexPos.z() << ")" );
      ATH_MSG_VERBOSE( " >>> " << __FUNCTION__ << ": New vertex cov = (" << cov.at(0) << ", " << cov.at(1) << ", " << cov.at(2) << ", " << cov.at(3) << ", " << cov.at(4) << ", " << cov.at(5) << ")" );
    }
 
    return SC;
  }
 
 
  //____________________________________________________________________________________________________
  size_t VrtSecInclusive::nTrkCommon( std::vector<WrkVrt> *workVerticesContainer, const std::pair<unsigned, unsigned>& pairIndex)
  {
    //
    //  Number of common tracks for 2 vertices
    //
 
    auto& trackIndices1 = workVerticesContainer->at( pairIndex.first ).selectedTrackIndices;
    auto& trackIndices2 = workVerticesContainer->at( pairIndex.second ).selectedTrackIndices;
 
    if( trackIndices1.size() < 2 ) return 0;
    if( trackIndices2.size() < 2 ) return 0;
 
    size_t nTrkCom = 0;
 
    for( auto& index : trackIndices1 ) {
  if( std::find(trackIndices2.begin(),trackIndices2.end(), index) != trackIndices2.end()) nTrkCom++;
    }
 
    return nTrkCom;
  }
 
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::declareProperties() {
 
    declareProperty("GeoModel",                        m_jp.geoModel                        = VKalVrtAthena::GeoModel::Run2 );
 
    declareProperty("TrackLocation",                   m_jp.TrackLocation                   = "InDetTrackParticles"         );
    declareProperty("MuonLocation",                    m_jp.MuonLocation                    = "Muons"                       );
    declareProperty("ElectronLocation",                m_jp.ElectronLocation                = "Electrons"                   );
    declareProperty("PrimVrtLocation",                 m_jp.PrimVrtLocation                 = "PrimaryVertices"             );
    declareProperty("McParticleContainer",             m_jp.truthParticleContainerName      = "TruthParticles"              );
    declareProperty("MCEventContainer",                m_jp.mcEventContainerName            = "TruthEvents"                 );
    declareProperty("AugmentingVersionString",         m_jp.augVerString                    = "_VSI"                            );
    declareProperty("TruthParticleFilter",             m_jp.truthParticleFilter             = "Rhadron"                     ); // Either "", "Kshort", "Rhadron", "HNL", "HadInt", "Bhadron"
 
    declareProperty("All2trkVerticesContainerName",    m_jp.all2trksVerticesContainerName   = "All2TrksVertices"            );
    declareProperty("SecondaryVerticesContainerName",  m_jp.secondaryVerticesContainerName  = "SecondaryVertices"           );
 
    declareProperty("FillHist",                        m_jp.FillHist                        = false                         );
    declareProperty("FillNtuple",                      m_jp.FillNtuple                      = false                         );
    declareProperty("FillIntermediateVertices",        m_jp.FillIntermediateVertices        = false                         );
    declareProperty("DoIntersectionPos",               m_jp.doIntersectionPos               = false                         );
    declareProperty("DoMapToLocal",                    m_jp.doMapToLocal                    = false                         );
    declareProperty("DoTruth",                         m_jp.doTruth                         = false                         );
    declareProperty("DoPVcompatibility",               m_jp.doPVcompatibilityCut            = true                          );
    declareProperty("DoTightPVcompatibility",          m_jp.doTightPVcompatibilityCut       = false                         );
    declareProperty("RemoveFake2TrkVrt",               m_jp.removeFakeVrt                   = true                          );
    declareProperty("DoDelayedFakeReject",             m_jp.removeFakeVrtLate               = false                         );
    declareProperty("CheckHitPatternStrategy",         m_checkPatternStrategy               = "Classical"                   ); // Either Classical or Extrapolation
    declareProperty("MCTrackResolution",               m_jp.mcTrkResolution                 = 0.06                          ); // see getTruth for explanation
    declareProperty("TruthTrkLen",                     m_jp.TruthTrkLen                     = 1000                          ); // in [mm]
    declareProperty("ExtrapPV",                        m_jp.extrapPV                        = false                         ); // Leave false. only for testing
    declareProperty("PassThroughTrackSelection",       m_jp.passThroughTrackSelection       = false                         );
    declareProperty("DoFastMode",                      m_jp.doFastMode                      = false                         );
 
 
    declareProperty("DoTwoTrSoftBtag",                 m_jp.doTwoTrSoftBtag                 = false                         );
    declareProperty("TwoTrVrtAngleCut",                m_jp.twoTrVrtAngleCut                = -10                           );
    declareProperty("TwoTrVrtMinDistFromPVCut",        m_jp.twoTrVrtMinDistFromPV           = 0.                            );
 
    declareProperty("TruncateListOfWorkingVertices",   m_jp.truncateWrkVertices             = true                           );
    declareProperty("MaxNumberOfWorkingVertices",      m_jp.maxWrkVertices                  = 1500                           );
 
    // default values are set upstream - check top of file
    declareProperty("do_PVvetoCut",                    m_jp.do_PVvetoCut                    = true                          );
    declareProperty("do_d0Cut",                        m_jp.do_d0Cut                        = true                          );
    declareProperty("do_z0Cut",                        m_jp.do_z0Cut                        = true                          );
    declareProperty("do_d0errCut",                     m_jp.do_d0errCut                     = false                         );
    declareProperty("do_z0errCut",                     m_jp.do_z0errCut                     = false                         );
    declareProperty("do_d0signifCut",                  m_jp.do_d0signifCut                  = false                         );
    declareProperty("do_z0signifCut",                  m_jp.do_z0signifCut                  = false                         );
 
    declareProperty("ImpactWrtBL",                     m_jp.ImpactWrtBL                     = true                          ); // false option is going to be deprecated
    declareProperty("a0TrkPVDstMinCut",                m_jp.d0TrkPVDstMinCut                = 0.                            ); // in [mm]
    declareProperty("a0TrkPVDstMaxCut",                m_jp.d0TrkPVDstMaxCut                = 1000.                         ); // in [mm]
    declareProperty("a0TrkPVSignifCut",                m_jp.d0TrkPVSignifCut                = 0.                            ); // in [mm]
    declareProperty("twoTrkVtxFormingD0Cut",           m_jp.twoTrkVtxFormingD0Cut           = 1.                            ); // in [mm]
    declareProperty("zTrkPVDstMinCut",                 m_jp.z0TrkPVDstMinCut                = 0.                            ); // in [mm]
    declareProperty("zTrkPVDstMaxCut",                 m_jp.z0TrkPVDstMaxCut                = 1000.                         ); // in [mm]
    declareProperty("zTrkPVSignifCut",                 m_jp.z0TrkPVSignifCut                = 0.                            ); // in unit of sigma
    declareProperty("TrkA0ErrCut",                     m_jp.d0TrkErrorCut                   = 10000                         ); // in [mm]
    declareProperty("TrkZErrCut",                      m_jp.z0TrkErrorCut                   = 20000                         ); // in [mm]
 
    declareProperty("SelTrkMaxCutoff",                 m_jp.SelTrkMaxCutoff                 = 50                            ); // max number of tracks
    declareProperty("TrkPtCut",                        m_jp.TrkPtCut                        = 1000.                         ); // low pT threshold. in [MeV]
    declareProperty("TrkChi2Cut",                      m_jp.TrkChi2Cut                      = 3.                            ); // in terms of chi2 / ndof
    declareProperty("PVcompatibilityCut",              m_jp.pvCompatibilityCut              = -20.                          ); // in [mm]
    declareProperty("SelVrtChi2Cut",                   m_jp.SelVrtChi2Cut                   = 4.5                           ); // in terms of chi2 / ndof
 
    declareProperty("CutSctHits",                      m_jp.CutSctHits                      = 0                             );
    declareProperty("CutPixelHits",                    m_jp.CutPixelHits                    = 0                             );
    declareProperty("CutSiHits",                       m_jp.CutSiHits                       = 0                             );
    declareProperty("DoSAloneTRT",                     m_jp.SAloneTRT                       = false                         ); // SAlone = "standalone"
    declareProperty("CutBLayHits",                     m_jp.CutBLayHits                     = 0                             );
    declareProperty("CutSharedHits",                   m_jp.CutSharedHits                   = 0                             );
    declareProperty("doTRTPixCut",                     m_jp.doTRTPixCut                     = false                         ); // mode for R-hadron displaced vertex
    declareProperty("CutTRTHits",                      m_jp.CutTRTHits                      = 0                             );
    declareProperty("CutTightSCTHits",                 m_jp.CutTightSCTHits                 = 7                             );
    declareProperty("CutTightTRTHits",                 m_jp.CutTightTRTHits                 = 20                            );
 
    declareProperty("TrkExtrapolator",                 m_jp.trkExtrapolator                 = 2                             );
 
    declareProperty("doReassembleVertices",            m_jp.doReassembleVertices            = false                         );
    declareProperty("doMergeByShuffling",              m_jp.doMergeByShuffling              = false                         );
    declareProperty("doSuggestedRefitOnMerging",       m_jp.doSuggestedRefitOnMerging       = true                          ); // sub-option of doMergeByShuffling-1
    declareProperty("doMagnetMerging",                 m_jp.doMagnetMerging                 = true                          ); // sub-option of doMergeByShuffling-2
    declareProperty("doWildMerging",                   m_jp.doWildMerging                   = true                          ); // sub-option of doMergeByShuffling-3
    declareProperty("doMergeFinalVerticesDistance",    m_jp.doMergeFinalVerticesDistance    = false                         );
    declareProperty("doAssociateNonSelectedTracks",    m_jp.doAssociateNonSelectedTracks    = false                         );
    declareProperty("doFinalImproveChi2",              m_jp.doFinalImproveChi2              = false                         );
 
    declareProperty("VertexMergeCut",                  m_jp.VertexMergeCut                  = 3                             );
    declareProperty("TrackDetachCut",                  m_jp.TrackDetachCut                  = 6                             );
    declareProperty("associateMinDistanceToPV",        m_jp.associateMinDistanceToPV        = 0.5                           );
    declareProperty("associateMaxD0Signif",            m_jp.associateMaxD0Signif            = 5.                            ); // wrt. DV in unit of sigma
    declareProperty("associateMaxZ0Signif",            m_jp.associateMaxZ0Signif            = 5.                            ); // wrt. DV in unit of sigma
    declareProperty("associatePtCut",                  m_jp.associatePtCut                  = 0.                            ); // in [MeV]
    declareProperty("associateChi2Cut",                m_jp.associateChi2Cut                = 20.                           );
    declareProperty("reassembleMaxImpactParameterD0",  m_jp.reassembleMaxImpactParameterD0  = 1.                            ); // wrt. DV in [mm]
    declareProperty("reassembleMaxImpactParameterZ0",  m_jp.reassembleMaxImpactParameterZ0  = 5.                            ); // wrt. DV in [mm]
    declareProperty("mergeByShufflingMaxSignificance", m_jp.mergeByShufflingMaxSignificance = 100.                          ); // in unit of sigma
    declareProperty("mergeByShufflingAllowance",       m_jp.mergeByShufflingAllowance       = 4.                            ); // in unit of sigma
    declareProperty("VertexMergeFinalDistCut",         m_jp.VertexMergeFinalDistCut         = 1.                            ); // in [mm]
    declareProperty("VertexMergeFinalDistScaling",     m_jp.VertexMergeFinalDistScaling     = 0.                            ); // in [1/mm]
    declareProperty("improveChi2ProbThreshold",        m_jp.improveChi2ProbThreshold        = 1.e-4                         );
 
    // A test implementation for muon vertices
    declareProperty("doSelectTracksFromMuons",         m_jp.doSelectTracksFromMuons         = false                         );
    declareProperty("doRemoveCaloTaggedMuons",         m_jp.doRemoveCaloTaggedMuons         = false                         );
    declareProperty("doSelectTracksFromElectrons",     m_jp.doSelectTracksFromElectrons     = false                         );
    declareProperty("doSelectIDAndGSFTracks",          m_jp.doSelectIDAndGSFTracks          = false                         );
    declareProperty("doRemoveNonLeptonVertices",       m_jp.doRemoveNonLeptonVertices       = false                         );
 
    // Disappearing track vertices
    declareProperty("doDisappearingTrackVertexing",   m_jp.doDisappearingTrackVertexing     = false                           );
    declareProperty("twoTrVrtMaxPerigeeDist",         m_jp.twoTrVrtMaxPerigeeDist           = 50                            ); // in [mm]
    declareProperty("twoTrVrtMinRadius",              m_jp.twoTrVrtMinRadius                = 50                            ); // in [mm]    
 
 
 
    // Select tracks with additonal LRT Cuts (inspiried by Run 3 LRT optimization studies)
    declareProperty("doSelectTracksWithLRTCuts",     m_jp.doSelectTracksWithLRTCuts     = false                               );
 
    // Additional dressing option
    declareProperty("doAugmentDVimpactParametersToMuons",     m_jp.doAugmentDVimpactParametersToMuons     = false           );
    declareProperty("doAugmentDVimpactParametersToElectrons", m_jp.doAugmentDVimpactParametersToElectrons = false           );
 
    // Additional ToolHandles
    declareProperty("VertexFitterTool",                m_fitSvc, " Private TrkVKalVrtFitter"                                );
    declareProperty("Extrapolator",                    m_extrapolator                                                       );
    declareProperty("TrackToVertexTool",               m_trackToVertexTool                                                  );
    declareProperty("TrackToVertexIPEstimatorTool",    m_trackToVertexIPEstimatorTool                                       );
    declareProperty("VertexMapper",                    m_vertexMapper                                                       );
    declareProperty("TruthToTrack",                    m_truthToTrack                                                       );
 
  }
 
 
 
 
  //____________________________________________________________________________________________________
  StatusCode VrtSecInclusive::processPrimaryVertices() {
 
    //--------------------------------------------------------
    //  Primary vertex extraction from TES
    //
 
    ATH_CHECK( evtStore()->retrieve( m_primaryVertices, "PrimaryVertices") );
 
    if( m_jp.FillNtuple ) m_ntupleVars->get<unsigned int>( "NumPV" ) = 0;
    m_thePV = nullptr;
 
    ATH_MSG_DEBUG( "processPrimaryVertices(): pv_size = " << m_primaryVertices->size() );
 
    // Loop over PV container and get number of tracks of each PV
 
    for( const auto *vertex : *m_primaryVertices ) {
 
      // Hide (2015-04-21): xAOD::Vertex may contain several types of vertices
      // e.g. if VertexType==NoVtx, this is a dummy vertex.
      // We only need to extract primary vertices here, and skip otherwise.
 
      if( xAOD::VxType::PriVtx != vertex->vertexType() ) continue;
 
      // Not considering pile-up; pick-up the first PV
      m_thePV = vertex;
 
      if( m_jp.FillNtuple ) {
 
        if( 0 == m_ntupleVars->get<unsigned int>( "NumPV" ) ) {
 
          m_ntupleVars->get<double>( "PVX" ) = vertex->x();
          m_ntupleVars->get<double>( "PVY" ) = vertex->y();
          m_ntupleVars->get<double>( "PVZ" ) = vertex->z();
          m_ntupleVars->get<unsigned int>( "PVType" ) = vertex->vertexType();
 
          // number of tracks associated to the PV
          m_ntupleVars->get<unsigned int>( "NTrksPV" ) = vertex->nTrackParticles();
        }
 
        m_ntupleVars->get<unsigned int>( "NumPV" )++;
 
        m_ntupleVars->get< vector<int> >   ( "NdofTrksPV" ) .emplace_back( vertex->numberDoF() );
        m_ntupleVars->get< vector<double> >( "PVZpile" )    .emplace_back( vertex->position().z() );
      }
 
      ATH_MSG_DEBUG("PrimVertex x/y/z/nDOF "
        << vertex->x() << ","
        << vertex->y() << ","
        << vertex->z() << ","
        << vertex->numberDoF()     );
 
    }
 
    // Use the dummy PV if no PV is composed
    if( !m_thePV ) {
      ATH_MSG_DEBUG("No Reconstructed PV was found. Using the dummy PV instead.");
      for( const auto *vertex : *m_primaryVertices ) {
  if( xAOD::VxType::NoVtx != vertex->vertexType() ) continue;
 
        if( m_jp.FillNtuple ) {
          // Not considering pile-up; pick-up the first PV
          if( 0 == m_ntupleVars->get<unsigned int>( "NumPV" ) ) {
            m_thePV = vertex;
 
            m_ntupleVars->get<double>( "PVX" ) = vertex->x();
            m_ntupleVars->get<double>( "PVY" ) = vertex->y();
            m_ntupleVars->get<double>( "PVZ" ) = vertex->z();
            m_ntupleVars->get<unsigned int>( "PVType" ) = vertex->vertexType();
 
            // number of tracks associated to the PV
            m_ntupleVars->get<unsigned int>( "NTrksPV" ) = vertex->nTrackParticles();
          }
        }
      }
    }
 
    // if thePV is null, the PV is not found.
    if( !m_thePV ) {
      ATH_MSG_DEBUG("No PV is found in the PV collection!");
      return StatusCode::FAILURE;
    }
 
    ATH_MSG_DEBUG(" Primary vertex successful. thePV = " << m_thePV );
 
    return StatusCode::SUCCESS;
  }
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::trackClassification(std::vector<WrkVrt> *workVerticesContainer, std::map<long int, std::vector<long int> >& trackToVertexMap )
  {
    // Fill TrkInVrt with vertex IDs of each track
 
    trackToVertexMap.clear();
 
    for( size_t iv = 0; iv<workVerticesContainer->size(); iv++ ) {
 
      WrkVrt& vertex = workVerticesContainer->at(iv);
 
      auto& trackIndices = vertex.selectedTrackIndices;
      if( !vertex.isGood ) continue;
      if( trackIndices.size() < 2 ) continue;
 
      for( auto& index : trackIndices ) {
  trackToVertexMap[index].emplace_back( iv );
      }
    }
 
    for( auto& pair: trackToVertexMap ) {
      std::string msg = Form("track index [%ld]: vertices = (", pair.first);
      for( auto& v : pair.second ) {
        msg += Form("%ld, ", v);
      }
      msg += ")";
      if( pair.second.size() >=2 ) ATH_MSG_VERBOSE(" >> " << __FUNCTION__ << ": " << msg );
    }
 
  }
 
 
  //____________________________________________________________________________________________________
  double VrtSecInclusive::findWorstChi2ofMaximallySharedTrack(std::vector<WrkVrt> *workVerticesContainer,
              std::map<long int, std::vector<long int> >& trackToVertexMap,
              long int & maxSharedTrack,
              long int & worstMatchingVertex)
  {
 
    double worstChi2 = AlgConsts::invalidFloat;
 
    // Find the track index that has the largest shared vertices
    auto maxSharedTrackToVertices = std::max_element( trackToVertexMap.begin(), trackToVertexMap.end(), []( auto& p1, auto& p2 ) { return p1.second.size() < p2.second.size(); } );
 
    if( maxSharedTrackToVertices == trackToVertexMap.end() ) return worstChi2;
 
    ATH_MSG_VERBOSE( " > " << __FUNCTION__ << ": max-shared track index = " << maxSharedTrackToVertices->first << ", number of shared vertices = " << maxSharedTrackToVertices->second.size() );
 
    if( maxSharedTrackToVertices->second.size() < 2 ) return worstChi2;
 
    // map of vertex index and the chi2 of the track for the maxSharedTrack
    std::map<long int, double> vrtChi2Map;
 
    // loop over vertices for the largest shared track
    for( auto& iv : maxSharedTrackToVertices->second ) {
      ATH_MSG_VERBOSE( " > " << __FUNCTION__ << ": loop over vertices: vertex index " << iv );
 
      auto& wrkvrt = workVerticesContainer->at( iv );
      auto& trackIndices = wrkvrt.selectedTrackIndices;
 
      // find the index of the track
      auto index = std::find_if( trackIndices.begin(), trackIndices.end(), [&]( auto& index ) { return index == maxSharedTrackToVertices->first; } );
      if( index == trackIndices.end() ) {
        ATH_MSG_WARNING(" >> " << __FUNCTION__ << ": index not found (algorithm inconsistent)" );
        return worstChi2;
      }
 
      auto& chi2 = wrkvrt.Chi2PerTrk.at( index - trackIndices.begin() );
 
      vrtChi2Map.emplace( std::pair<long int, double>(iv, chi2) );
    }
 
    auto worstVrtChi2Pair = std::max_element( vrtChi2Map.begin(), vrtChi2Map.end(), []( auto& p1, auto& p2 ) { return p1.second < p2.second; } );
 
    if( worstVrtChi2Pair == vrtChi2Map.end() ) {
      ATH_MSG_WARNING(" >> " << __FUNCTION__ << ": max_element of vrtChi2Map not found" );
      return worstChi2;
    }
 
    maxSharedTrack      = maxSharedTrackToVertices->first;
    worstMatchingVertex = worstVrtChi2Pair->first;
    worstChi2           = worstVrtChi2Pair->second;
 
    return worstChi2;
  }
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::printWrkSet(const std::vector<WrkVrt> *workVerticesContainer, const std::string& name)
  {
    ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": ===============================================================" );
    ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": " << name << ": #vertices = " << workVerticesContainer->size() );
 
    std::set<const xAOD::TrackParticle*> usedTracks;
 
    auto concatenateIndicesToString = []( auto indices, auto& collection ) -> std::string {
      if( 0 == indices.size() ) return "";
      return std::accumulate( std::next(indices.begin()), indices.end(), std::to_string( indices.at(0) ),
                              [&collection]( const std::string& str, auto& index ) { return str + ", " + std::to_string( collection.at(index)->index() ); } );
    };
 
    std::map<const xAOD::TruthVertex*, bool> previous;
 
    for( auto& pair : m_matchMap ) { previous.emplace( pair.first, pair.second ); }
 
    m_matchMap.clear();
    for( const auto* truthVertex : m_tracingTruthVertices ) { m_matchMap.emplace( truthVertex, false ); }
 
    for(size_t iv=0; iv<workVerticesContainer->size(); iv++) {
      const auto& wrkvrt = workVerticesContainer->at(iv);
 
      if( wrkvrt.nTracksTotal() < 2 ) continue;
 
      std::string sels    = concatenateIndicesToString( wrkvrt.selectedTrackIndices,   m_selectedTracks   );
      std::string assocs  = concatenateIndicesToString( wrkvrt.associatedTrackIndices, m_associatedTracks );
 
      for( const auto& index : wrkvrt.selectedTrackIndices )   { usedTracks.insert( m_selectedTracks.at(index) );   }
      for( const auto& index : wrkvrt.associatedTrackIndices ) { usedTracks.insert( m_associatedTracks.at(index) ); }
 
      ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": " << name << " vertex [" <<  iv << "]: " << &wrkvrt
                     << ", isGood  = "           << (wrkvrt.isGood? "true" : "false")
                     << ", #ntrks(tot, sel, assoc) = (" << wrkvrt.nTracksTotal() << ", " << wrkvrt.selectedTrackIndices.size() << ", " << wrkvrt.associatedTrackIndices.size() << "), "
                     << ", chi2/ndof = "         << wrkvrt.fitQuality()
                     << ", (r, z) = ("           << wrkvrt.vertex.perp()
                     << ", "                     << wrkvrt.vertex.z() << ")"
                     << ", sels = { "            << sels << " }"
                     << ", assocs = { "          << assocs << " }" );
 
      // Truth match condition
      for( const auto* truthVertex : m_tracingTruthVertices ) {
 
 
        Amg::Vector3D vTruth( truthVertex->x(), truthVertex->y(), truthVertex->z() );
        Amg::Vector3D vReco ( wrkvrt.vertex.x(), wrkvrt.vertex.y(), wrkvrt.vertex.z() );
 
        const auto distance = vReco - vTruth;
 
        AmgSymMatrix(3) cov;
        cov.fillSymmetric( 0, 0, wrkvrt.vertexCov.at(0) );
        cov.fillSymmetric( 1, 0, wrkvrt.vertexCov.at(1) );
        cov.fillSymmetric( 1, 1, wrkvrt.vertexCov.at(2) );
        cov.fillSymmetric( 2, 0, wrkvrt.vertexCov.at(3) );
        cov.fillSymmetric( 2, 1, wrkvrt.vertexCov.at(4) );
        cov.fillSymmetric( 2, 2, wrkvrt.vertexCov.at(5) );
 
        const double s2 = distance.transpose() * cov.inverse() * distance;
 
        if( distance.norm() < 2.0 || s2 < 100. ) m_matchMap.at( truthVertex ) = true;
 
      }
 
    }
 
    ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": number of used tracks = " << usedTracks.size() );
 
    if( !previous.empty() && previous.size() == m_matchMap.size() ) {
      for( auto& pair : m_matchMap ) {
        if( previous.find( pair.first ) == previous.end() ) continue;
        if( pair.second != previous.at( pair.first ) ) {
          ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": Match flag has changed: (r, z) = (" << pair.first->perp() << ", " << pair.first->z() << ")" );
        }
      }
    }
 
    if( m_jp.FillHist ) {
      for( auto& pair : m_matchMap ) {
        if( pair.second ) m_hists["nMatchedTruths"]->Fill( m_vertexingAlgorithmStep+2, pair.first->perp() );
      }
    }
 
    std::string msg;
    for( const auto* trk : usedTracks ) { msg += Form("%ld, ", trk->index() ); }
 
    ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": used tracks = " << msg );
    ATH_MSG_DEBUG( " >> " << __FUNCTION__ << ": ===============================================================" );
 
  }
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::fillTrackSummary( track_summary& summary, const xAOD::TrackParticle *trk ) {
    summary.numIBLHits    = 0;
    summary.numBLayerHits = 0;
    summary.numPixelHits  = 0;
    summary.numSctHits    = 0;
    summary.numTrtHits    = 0;
 
    trk->summaryValue( summary.numIBLHits,    xAOD::numberOfInnermostPixelLayerHits );
    trk->summaryValue( summary.numBLayerHits, xAOD::numberOfNextToInnermostPixelLayerHits );
    trk->summaryValue( summary.numPixelHits,  xAOD::numberOfPixelHits );
    trk->summaryValue( summary.numSctHits,    xAOD::numberOfSCTHits );
    trk->summaryValue( summary.numTrtHits,    xAOD::numberOfTRTHits );
  }
 
 
 
  //____________________________________________________________________________________________________
  VrtSecInclusive::ExtrapolatedPattern* VrtSecInclusive::extrapolatedPattern( const xAOD::TrackParticle* trk, enum Trk::PropDirection direction ) {
 
    auto* pattern = new ExtrapolatedPattern;
    const EventContext& ctx = Gaudi::Hive::currentContext();
    std::vector<std::unique_ptr<Trk::TrackParameters>> paramsVector =
      m_extrapolator->extrapolateBlindly(ctx, trk->perigeeParameters(), direction);
 
    TVector3 prevPos( AlgConsts::invalidFloat, AlgConsts::invalidFloat, AlgConsts::invalidFloat );
 
    auto nDisabled = 0;
 
    for( auto& params : paramsVector ) {
 
      const TVector3 position( params->position().x(), params->position().y(), params->position().z() );
 
      if( prevPos == position ) {
        continue;
      }
 
      prevPos = position;
 
      const auto* detElement = params->associatedSurface().associatedDetectorElement();
 
      if( detElement ) {
 
        enum { Pixel = 1, SCT = 2 };
 
        const auto& id = detElement->identify();
        Flag good = false;
 
        if( m_atlasId->is_pixel(id) ) {
 
          auto idHash = m_pixelId->wafer_hash( id );
          good = m_pixelCondSummaryTool->isGood( idHash, ctx );
 
          pattern->emplace_back( std::make_tuple( position, Pixel, m_pixelId->barrel_ec(id), m_pixelId->layer_disk(id), good ) );
 
        } else if( m_atlasId->is_sct(id) ) {
 
          auto idHash = m_sctId->wafer_hash( id );
          good = m_sctCondSummaryTool->isGood( idHash, ctx );
 
          pattern->emplace_back( std::make_tuple( position, SCT, m_sctId->barrel_ec(id), m_sctId->layer_disk(id), good ) );
 
        }
 
        if( !pattern->empty() ) {
 
          ATH_MSG_VERBOSE(" >> " << __FUNCTION__ << ", track " << trk << ": position = (" << position.Perp() << ", " << position.z() << ", " << position.Phi() << "), detElement ID = " << id << ", good = " << good
                          << ": (det, bec, layer) = (" << std::get<1>( pattern->back() ) << ", " << std::get<2>( pattern->back() ) << ", "  << std::get<3>( pattern->back() ) << ")" );
 
    if( !good ) nDisabled++;
        }
 
      }
 
    }
 
    if( m_jp.FillHist ) {
      m_hists["disabledCount"]->Fill( nDisabled );
    }
 
    return pattern;
 
  }
 
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::checkTrackHitPatternToVertexByExtrapolation( const xAOD::TrackParticle *trk, const Amg::Vector3D& vertex )
  {
 
    if( m_extrapolatedPatternBank.find( trk ) == m_extrapolatedPatternBank.end() ) {
 
      std::unique_ptr<ExtrapolatedPattern> exPattern_along( extrapolatedPattern( trk, Trk::alongMomentum ) );
      std::unique_ptr<ExtrapolatedPattern> exPattern_oppos( extrapolatedPattern( trk, Trk::oppositeMomentum ) );
 
      m_extrapolatedPatternBank.emplace( trk, std::make_pair( std::move(exPattern_along), std::move(exPattern_oppos) ) );
 
    }
 
    auto& exPattern = m_extrapolatedPatternBank.at( trk );
 
    using LayerCombination = std::vector<int>;
 
    std::map<LayerCombination, unsigned> layerMap;
    if( layerMap.empty() ) {
      layerMap[ { 1, 0, 0 } ] = Trk::pixelBarrel0;
      layerMap[ { 1, 0, 1 } ] = Trk::pixelBarrel1;
      layerMap[ { 1, 0, 2 } ] = Trk::pixelBarrel2;
      layerMap[ { 1, 0, 3 } ] = Trk::pixelBarrel3;
 
      layerMap[ { 1, 2, 0 } ] = Trk::pixelEndCap0;
      layerMap[ { 1, 2, 1 } ] = Trk::pixelEndCap1;
      layerMap[ { 1, 2, 2 } ] = Trk::pixelEndCap2;
      layerMap[ { 1,-2, 0 } ] = Trk::pixelEndCap0;
      layerMap[ { 1,-2, 1 } ] = Trk::pixelEndCap1;
      layerMap[ { 1,-2, 2 } ] = Trk::pixelEndCap2;
 
      layerMap[ { 2, 0, 0 } ] = Trk::sctBarrel0;
      layerMap[ { 2, 0, 1 } ] = Trk::sctBarrel1;
      layerMap[ { 2, 0, 2 } ] = Trk::sctBarrel2;
      layerMap[ { 2, 0, 3 } ] = Trk::sctBarrel3;
 
      layerMap[ { 2, 2, 0 } ] = Trk::sctEndCap0;
      layerMap[ { 2, 2, 1 } ] = Trk::sctEndCap1;
      layerMap[ { 2, 2, 2 } ] = Trk::sctEndCap2;
      layerMap[ { 2, 2, 3 } ] = Trk::sctEndCap3;
      layerMap[ { 2, 2, 4 } ] = Trk::sctEndCap4;
      layerMap[ { 2, 2, 5 } ] = Trk::sctEndCap5;
      layerMap[ { 2, 2, 6 } ] = Trk::sctEndCap6;
      layerMap[ { 2, 2, 7 } ] = Trk::sctEndCap7;
      layerMap[ { 2, 2, 8 } ] = Trk::sctEndCap8;
      layerMap[ { 2,-2, 0 } ] = Trk::sctEndCap0;
      layerMap[ { 2,-2, 1 } ] = Trk::sctEndCap1;
      layerMap[ { 2,-2, 2 } ] = Trk::sctEndCap2;
      layerMap[ { 2,-2, 3 } ] = Trk::sctEndCap3;
      layerMap[ { 2,-2, 4 } ] = Trk::sctEndCap4;
      layerMap[ { 2,-2, 5 } ] = Trk::sctEndCap5;
      layerMap[ { 2,-2, 6 } ] = Trk::sctEndCap6;
      layerMap[ { 2,-2, 7 } ] = Trk::sctEndCap7;
      layerMap[ { 2,-2, 8 } ] = Trk::sctEndCap8;
    }
 
    enum { position=0, detector=1, bec=2, layer=3, isGood=4 };
 
    // Lambda!
    auto getDetectorType = [&]( const ExtrapolatedPoint& point ) -> unsigned {
 
      const LayerCombination comb { std::get<detector>( point ), std::get<bec>( point ), std::get<layer>( point ) };
 
      for( auto& pair : layerMap ) {
        if( pair.first == comb ) {
          return pair.second;
        }
      }
 
      return AlgConsts::invalidUnsigned;
    };
 
    enum { kShouldNotHaveHit, kShouldHaveHit, kMayHaveHit };
    std::vector<unsigned> expectedHitPattern(Trk::numberOfDetectorTypes, kShouldNotHaveHit);
 
    auto minExpectedRadius = AlgConsts::maxValue;
 
    // Loop over extrapolated points (along direction)
    auto& exPattern_along = *( exPattern.first  );
 
    for( auto itr = exPattern_along.begin(); itr != exPattern_along.end(); ++itr ) {
      if( std::next( itr ) == exPattern_along.end() ) continue;
 
      const auto& point      = *itr;
      const auto& nextPoint  = *( std::next( itr ) );
 
      ATH_MSG_VERBOSE( " > " <<  __FUNCTION__ << ": isGood = " << std::get<isGood>( point ) );
 
      const auto& thisPos = std::get<position>( point );
      const auto& nextPos = std::get<position>( nextPoint );
 
      auto sectionVector = nextPos - thisPos;
      auto vertexVector  = TVector3( vertex.x(), vertex.y(), vertex.z() ) - thisPos;
 
 
      const auto& detectorType = getDetectorType( point );
 
      ATH_MSG_VERBOSE( " > " <<  __FUNCTION__ << ": detType = " << detectorType );
 
      if( detectorType == AlgConsts::invalidUnsigned ) continue;
      if( detectorType >= Trk::numberOfDetectorTypes ) continue;
 
      // if the vertex is nearby (within 10 mm), the hit may be presnet ("X")
      if( vertexVector.Mag() < 10. ) {
        expectedHitPattern.at( detectorType ) = kMayHaveHit;
        continue;
      }
 
      // if the front-end module is not active, then the hit is not expected,
      // which means the hit may be present
      if( !static_cast<bool>(std::get<isGood>( point )) ) {
        expectedHitPattern.at( detectorType ) = kMayHaveHit;
        continue;
      }
 
      // if the inner product of the above two vectors is positive,
      // then point is inner than the vertex.
      // Else, the point is outer than the vertex and expect to have hits
      // when the track is originated from the vertex.
 
      if( sectionVector.Mag() == 0. ) continue;
 
      ATH_MSG_VERBOSE( " > " <<  __FUNCTION__
                       << ": hitPos = (" << thisPos.Perp() << ", " << thisPos.z() << ", " << thisPos.Phi() << ")"
                       << ", sectionVec = (" << sectionVector.Perp() << ", " << sectionVector.z() << ", " << sectionVector.Phi() << ")"
                       << ", vertexVec = (" << vertexVector.Perp() << ", " << vertexVector.z() << ", " << vertexVector.Phi() << ")"
                       << ", cos(s,v)  = " << sectionVector * vertexVector / ( sectionVector.Mag() * vertexVector.Mag() + AlgConsts::infinitesimal ) );
 
      if( sectionVector * vertexVector > 0. ) continue;
 
      if( minExpectedRadius > thisPos.Perp() ) minExpectedRadius = thisPos.Perp();
 
      // now, the hit is expected to present.
 
      expectedHitPattern.at( detectorType ) = kShouldHaveHit;
    }
 
    // Loop over extrapolated points (opposite direction)
    auto& exPattern_oppos = *( exPattern.second );
    bool oppositeFlag = false;
 
    for( auto itr = exPattern_oppos.begin(); itr != exPattern_oppos.end(); ++itr ) {
      if( std::next( itr ) == exPattern_oppos.end() ) continue;
 
      const auto& point      = *itr;
      const auto& nextPoint  = *( std::next( itr ) );
 
      const auto& thisPos = std::get<position>( point );
      const auto& nextPos = std::get<position>( nextPoint );
 
      auto sectionVector = nextPos - thisPos;
      auto vertexVector  = TVector3( vertex.x(), vertex.y(), vertex.z() ) - thisPos;
 
      const auto& detectorType = getDetectorType( point );
 
      ATH_MSG_VERBOSE( " > " <<  __FUNCTION__ << ": detType = " << detectorType );
 
      ATH_MSG_DEBUG( " > " <<  __FUNCTION__
                       << ": hitPos = (" << thisPos.Perp() << ", " << thisPos.z() << ", " << thisPos.Phi() << ")"
                       << ", vertex = (" << vertex.perp() << ", " << vertex.z() << ", " << vertex.phi() << ")"
                       << ", cos(s,v)  = " << sectionVector * vertexVector / ( sectionVector.Mag() * vertexVector.Mag() + AlgConsts::infinitesimal ) );
 
      if( detectorType == AlgConsts::invalidUnsigned ) continue;
      if( detectorType >= Trk::numberOfDetectorTypes ) continue;
 
      if( sectionVector * vertexVector < 0. ) {
        oppositeFlag = true;
      }
    }
 
    // If the first expected point's radius is smaller than the vertex radius,
    // it's the case that the vertex was reconstructed in the opposite phi-direction
    // to the track outgoing direction. Such a case should be rejected.
    // bool oppositeFlag = ( minExpectedRadius < vertex.perp() );
 
    std::string msg = "Expected hit pattern: ";
    for( unsigned i=0; i<Trk::numberOfDetectorTypes; i++) {
      msg += Form("%s", expectedHitPattern.at(i) < kMayHaveHit? Form("%u", expectedHitPattern.at(i)) : "X" );
    }
    ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": " << msg );
 
    msg = "Recorded hit pattern: ";
    for( unsigned i=0; i<Trk::numberOfDetectorTypes; i++) {
      msg += Form("%u", ( trk->hitPattern() >> i ) & 1 );
    }
    ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": " << msg );
 
    std::vector<unsigned> matchedLayers;
 
    for( unsigned i=0; i<Trk::numberOfDetectorTypes; i++) {
      const unsigned recordedPattern = ( (trk->hitPattern()>>i) & 1 );
 
      if( expectedHitPattern.at(i) == kMayHaveHit ) {
        matchedLayers.emplace_back( i );
      } else if( expectedHitPattern.at(i) == kShouldHaveHit ) {
        if( expectedHitPattern.at(i) != recordedPattern ) {
          break;
        } else {
          matchedLayers.emplace_back( i );
        }
      } else {
        if( expectedHitPattern.at(i) != recordedPattern ) {
          break;
        }
      }
 
    }
 
    uint8_t PixelHits = 0;
    uint8_t SctHits   = 0;
    uint8_t TRTHits   = 0;
    if( !(trk->summaryValue( PixelHits, xAOD::numberOfPixelHits ) ) ) PixelHits =0;
    if( !(trk->summaryValue( SctHits,   xAOD::numberOfSCTHits   ) ) ) SctHits   =0;
    if( !(trk->summaryValue( TRTHits,   xAOD::numberOfTRTHits   ) ) ) TRTHits   =0;
 
    auto dphi = trk->phi() - vertex.phi();
    while( dphi >  TMath::Pi() ) dphi -= TMath::TwoPi();
    while( dphi < -TMath::Pi() ) dphi += TMath::TwoPi();
 
    ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": vtx phi = " << vertex.phi() << ", track phi = " << trk->phi() << ", dphi = " << dphi
                   << ", oppositeFlag = " << oppositeFlag
                   << ", nPixelHits = " << static_cast<int>(PixelHits)
                   << ", nSCTHits = " << static_cast<int>(SctHits)
                   << ", nTRTHits = " << static_cast<int>(TRTHits)
                   << ", nMatchedLayers = " << matchedLayers.size() );
 
    if( PixelHits == 0 && vertex.perp() > 300. ) {
      ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": vertex r > 300 mm, w/o no pixel hits" );
    }
 
 
    // Requires the first 2 layers with the hit matches.
    if( matchedLayers.size() < 2 ) return false;
 
    // In case of the first matched layer is not within pixel barrel, requires the first 4 layers with the hit match
    if( matchedLayers.at(0) >= Trk::pixelEndCap0 ) {
      if( matchedLayers.size() < 4 ) return false;
    }
 
    // Sometimes the vertex is reconstructed at the opposite phi direction.
    // In this case, the pattern match may pass.
    // This can be avoided by requiring that the
    if( oppositeFlag ) return false;
 
    // The following condition should apply for vertices outer than IBL.
    if( false /*matchedLayers.at(0) > Trk::pixelBarrel0*/ ) {
 
      // If the dphi (defined above) is opposite, reject.
      if( fabs( dphi ) > TMath::Pi()/2.0 ) return false;
 
      // If the track is not within the forward hemisphere to the vertex, reject.
      TVector3 trkP; trkP.SetPtEtaPhi( trk->pt(), trk->eta(), trk->phi() );
      TVector3 vtx; vtx.SetXYZ( vertex.x(), vertex.y(), vertex.z() );
      if( trkP.Dot( vtx ) < 0. ) return false;
 
    }
 
    return true;
  }
 
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::patternCheckRun2( const uint32_t& pattern, const Amg::Vector3D& vertex ) {
 
    //
    // rough guesses for active layers:
    // BeamPipe: 23.5-24.3
    // IBL: 31.0-38.4
    // Pix0 (BLayer): 47.7-54.4, Pix1: 85.5-92.2, Pix2: 119.3-126.1
    // Sct0: 290-315, Sct1: 360-390, Sct2: 430-460, Sct3:500-530
    //
 
    const double rad  = vertex.perp();
    const double absz = fabs( vertex.z() );
 
    // vertex area classification
    enum vertexArea {
      insideBeamPipe,
 
      insidePixelBarrel0,
      aroundPixelBarrel0,
 
      outsidePixelBarrel0_and_insidePixelBarrel1,
      aroundPixelBarrel1,
 
      outsidePixelBarrel1_and_insidePixelBarrel2,
      aroundPixelBarrel2,
 
      outsidePixelBarrel2_and_insidePixelBarrel3,
      aroundPixelBarrel3,
 
      outsidePixelBarrel3_and_insideSctBarrel0,
      aroundSctBarrel0,
 
      outsideSctBarrel0_and_insideSctBarrel1,
      aroundSctBarrel1,
    };
 
    // Mutually exclusive vertex position pattern
    int vertex_pattern = 0;
    if( rad < 23.50 ) {
      vertex_pattern = insideBeamPipe;
 
    } else if( rad < 31.0 && absz < 331.5 ) {
      vertex_pattern = insidePixelBarrel0;
 
    } else if( rad < 38.4 && absz < 331.5 ) {
      vertex_pattern = aroundPixelBarrel0;
 
    } else if( rad < 47.7 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel0_and_insidePixelBarrel1;
 
    } else if( rad < 54.4 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel1;
 
    } else if( rad < 85.5 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel1_and_insidePixelBarrel2;
 
    } else if( rad < 92.2 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel2;
 
    } else if( rad < 119.3 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel2_and_insidePixelBarrel3;
 
    } else if( rad < 126.1 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel3;
 
    } else if( rad < 290 && absz < 749.0 ) {
      vertex_pattern = outsidePixelBarrel3_and_insideSctBarrel0;
 
    } else if( rad < 315 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel0;
 
    } else if( rad < 360 && absz < 749.0 ) {
      vertex_pattern = outsideSctBarrel0_and_insideSctBarrel1;
 
    } else if( rad < 390 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel1;
 
    } else {
    }
 
    unsigned nPixelLayers { 0 };
    {
      if ( pattern & (1 << Trk::pixelBarrel0) ) nPixelLayers++;
      if ( pattern & (1 << Trk::pixelBarrel1) ) nPixelLayers++;
      if ( pattern & (1 << Trk::pixelBarrel2) ) nPixelLayers++;
      if ( pattern & (1 << Trk::pixelBarrel3) ) nPixelLayers++;
      if ( pattern & (1 << Trk::pixelEndCap0) ) nPixelLayers++;
      if ( pattern & (1 << Trk::pixelEndCap1) ) nPixelLayers++;
      if ( pattern & (1 << Trk::pixelEndCap2) ) nPixelLayers++;
    }
 
    if( vertex_pattern == insideBeamPipe ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if( nPixelLayers < 3 )                     return false;
 
 
    } else if( vertex_pattern == insidePixelBarrel0 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if( nPixelLayers < 3 )                     return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel0 ) {
 
      // require nothing for PixelBarrel0
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( nPixelLayers < 2 )                     return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel0_and_insidePixelBarrel1 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( nPixelLayers < 2 )                     return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel1 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      // require nothing for PixelBarrel
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( nPixelLayers < 2 )                     return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel1_and_insidePixelBarrel2 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( nPixelLayers < 2 )                     return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel2 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      // require nothing for PixelBarrel2
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel2_and_insidePixelBarrel3 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
    else if( vertex_pattern == aroundPixelBarrel3 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      // require nothing for PixelBarrel3
      if( ! (pattern & (1<<Trk::sctBarrel0)) )   return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel3_and_insideSctBarrel0 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel0 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      // require nothing for SctBarrel0
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == outsideSctBarrel0_and_insideSctBarrel1 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if(   (pattern & (1<<Trk::sctBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel1 ) {
      if(   (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if(   (pattern & (1<<Trk::sctBarrel0)) ) return false;
      // require nothing for SctBarrel1
      if( ! (pattern & (1<<Trk::sctBarrel2)) ) return false;
    }
 
    return true;
 
  }
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::patternCheckRun2OuterOnly( const uint32_t& pattern, const Amg::Vector3D& vertex ) {
 
    //
    // rough guesses for active layers:
    // BeamPipe: 23.5-24.3
    // IBL: 31.0-38.4
    // Pix0 (BLayer): 47.7-54.4, Pix1: 85.5-92.2, Pix2: 119.3-126.1
    // Sct0: 290-315, Sct1: 360-390, Sct2: 430-460, Sct3:500-530
    //
 
    const double rad  = vertex.perp();
    const double absz = fabs( vertex.z() );
 
    // vertex area classification
    enum vertexArea {
      insideBeamPipe,
 
      insidePixelBarrel0,
      aroundPixelBarrel0,
 
      outsidePixelBarrel0_and_insidePixelBarrel1,
      aroundPixelBarrel1,
 
      outsidePixelBarrel1_and_insidePixelBarrel2,
      aroundPixelBarrel2,
 
      outsidePixelBarrel2_and_insidePixelBarrel3,
      aroundPixelBarrel3,
 
      outsidePixelBarrel3_and_insideSctBarrel0,
      aroundSctBarrel0,
 
      outsideSctBarrel0_and_insideSctBarrel1,
      aroundSctBarrel1,
    };
 
    // Mutually exclusive vertex position pattern
    int vertex_pattern = 0;
    if( rad < 23.50 ) {
      vertex_pattern = insideBeamPipe;
 
    } else if( rad < 31.0 && absz < 331.5 ) {
      vertex_pattern = insidePixelBarrel0;
 
    } else if( rad < 38.4 && absz < 331.5 ) {
      vertex_pattern = aroundPixelBarrel0;
 
    } else if( rad < 47.7 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel0_and_insidePixelBarrel1;
 
    } else if( rad < 54.4 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel1;
 
    } else if( rad < 85.5 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel1_and_insidePixelBarrel2;
 
    } else if( rad < 92.2 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel2;
 
    } else if( rad < 119.3 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel2_and_insidePixelBarrel3;
 
    } else if( rad < 126.1 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel3;
 
    } else if( rad < 290 && absz < 749.0 ) {
      vertex_pattern = outsidePixelBarrel3_and_insideSctBarrel0;
 
    } else if( rad < 315 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel0;
 
    } else if( rad < 360 && absz < 749.0 ) {
      vertex_pattern = outsideSctBarrel0_and_insideSctBarrel1;
 
    } else if( rad < 390 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel1;
 
    } else {
    }
 
 
    unsigned nPixelLayers { 0 };
    {
      nPixelLayers += ( pattern & (1 << Trk::pixelBarrel0) );
      nPixelLayers += ( pattern & (1 << Trk::pixelBarrel1) );
      nPixelLayers += ( pattern & (1 << Trk::pixelBarrel2) );
      nPixelLayers += ( pattern & (1 << Trk::pixelBarrel3) );
      nPixelLayers += ( pattern & (1 << Trk::pixelEndCap0) );
      nPixelLayers += ( pattern & (1 << Trk::pixelEndCap1) );
      nPixelLayers += ( pattern & (1 << Trk::pixelEndCap2) );
    }
 
    if( vertex_pattern == insideBeamPipe ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( nPixelLayers < 3                     ) return false;
 
    } else if( vertex_pattern == insidePixelBarrel0 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( nPixelLayers < 3                     ) return false;
 
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel0 ) {
 
      // require nothing for PixelBarrel0
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( nPixelLayers < 3                     ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel0_and_insidePixelBarrel1 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( nPixelLayers < 3                     ) return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel1 ) {
 
      // require nothing for PixelBarrel1
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if( nPixelLayers < 2                     ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel1_and_insidePixelBarrel2 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if( nPixelLayers < 2                     ) return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel2 ) {
 
      // require nothing for PixelBarrel2
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel2_and_insidePixelBarrel3 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
    else if( vertex_pattern == aroundPixelBarrel3 ) {
 
      // require nothing for PixelBarrel3
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel3_and_insideSctBarrel0 ) {
 
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel0 ) {
 
      // require nothing for SctBarrel0
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel2)) ) return false;
    }
 
 
    else if( vertex_pattern == outsideSctBarrel0_and_insideSctBarrel1 ) {
 
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel2)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel1 ) {
      // require nothing for SctBarrel1
      if( ! (pattern & (1<<Trk::sctBarrel2)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel3)) ) return false;
    }
 
    return true;
 
  }
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::patternCheckRun1( const uint32_t& pattern, const Amg::Vector3D& vertex ) {
    //
    // rough guesses for active layers:
    // BeamPipe: 25.0
    // Pix0 (BLayer): 47.7-54.4, Pix1: 85.5-92.2, Pix2: 119.3-126.1
    // Sct0: 290-315, Sct1: 360-390, Sct2: 430-460, Sct3:500-530
    //
 
    const double rad  = vertex.perp();
    const double absz = fabs( vertex.z() );
 
    // vertex area classification
    enum vertexArea {
      insideBeamPipe,
 
      insidePixelBarrel1,
      aroundPixelBarrel1,
 
      outsidePixelBarrel1_and_insidePixelBarrel2,
      aroundPixelBarrel2,
 
      outsidePixelBarrel2_and_insidePixelBarrel3,
      aroundPixelBarrel3,
 
      outsidePixelBarrel3_and_insideSctBarrel0,
      aroundSctBarrel0,
 
      outsideSctBarrel0_and_insideSctBarrel1,
      aroundSctBarrel1,
    };
 
    // Mutually exclusive vertex position pattern
    Int_t vertex_pattern = 0;
    if( rad < 25.00 ) {
      vertex_pattern = insideBeamPipe;
 
    } else if( rad < 47.7 && absz < 400.5 ) {
      vertex_pattern = insidePixelBarrel1;
 
    } else if( rad < 54.4 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel1;
 
    } else if( rad < 85.5 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel1_and_insidePixelBarrel2;
 
    } else if( rad < 92.2 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel2;
 
    } else if( rad < 119.3 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel2_and_insidePixelBarrel3;
 
    } else if( rad < 126.1 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel3;
 
    } else if( rad < 290 && absz < 749.0 ) {
      vertex_pattern = outsidePixelBarrel3_and_insideSctBarrel0;
 
    } else if( rad < 315 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel0;
 
    } else if( rad < 360 && absz < 749.0 ) {
      vertex_pattern = outsideSctBarrel0_and_insideSctBarrel1;
 
    } else if( rad < 390 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel1;
 
    } else {
    }
 
 
    if( vertex_pattern == insideBeamPipe ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
 
    }
 
 
    else if( vertex_pattern == insidePixelBarrel1 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel1 ) {
 
      // require nothing for PixelBarrel1
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel1_and_insidePixelBarrel2 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel2 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      // require nothing for PixelBarrel2
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel2_and_insidePixelBarrel3 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
    else if( vertex_pattern == aroundPixelBarrel3 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      // require nothing for PixelBarrel3
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel3_and_insideSctBarrel0 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel0 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      // require nothing for SctBarrel0
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == outsideSctBarrel0_and_insideSctBarrel1 ) {
 
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if(   (pattern & (1<<Trk::sctBarrel0)) ) return false;
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel1 ) {
      if(   (pattern & (1<<Trk::pixelBarrel1)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel2)) ) return false;
      if(   (pattern & (1<<Trk::pixelBarrel3)) ) return false;
      if(   (pattern & (1<<Trk::sctBarrel0)) ) return false;
      // require nothing for SctBarrel1
      if( ! (pattern & (1<<Trk::sctBarrel2)) ) return false;
    }
 
    return true;
  }
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::patternCheckRun1OuterOnly( const uint32_t& pattern, const Amg::Vector3D& vertex ) {
    //
    // rough guesses for active layers:
    // BeamPipe: 25.0
    // Pix0 (BLayer): 47.7-54.4, Pix1: 85.5-92.2, Pix2: 119.3-126.1
    // Sct0: 290-315, Sct1: 360-390, Sct2: 430-460, Sct3:500-530
    //
 
    const double rad  = vertex.perp();
    const double absz = fabs( vertex.z() );
 
    // vertex area classification
    enum vertexArea {
      insideBeamPipe,
 
      insidePixelBarrel1,
      aroundPixelBarrel1,
 
      outsidePixelBarrel1_and_insidePixelBarrel2,
      aroundPixelBarrel2,
 
      outsidePixelBarrel2_and_insidePixelBarrel3,
      aroundPixelBarrel3,
 
      outsidePixelBarrel3_and_insideSctBarrel0,
      aroundSctBarrel0,
 
      outsideSctBarrel0_and_insideSctBarrel1,
      aroundSctBarrel1,
    };
 
    // Mutually exclusive vertex position pattern
    Int_t vertex_pattern = 0;
    if( rad < 25.00 ) {
      vertex_pattern = insideBeamPipe;
 
    } else if( rad < 47.7 && absz < 400.5 ) {
      vertex_pattern = insidePixelBarrel1;
 
    } else if( rad < 54.4 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel1;
 
    } else if( rad < 85.5 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel1_and_insidePixelBarrel2;
 
    } else if( rad < 92.2 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel2;
 
    } else if( rad < 119.3 && absz < 400.5 ) {
      vertex_pattern = outsidePixelBarrel2_and_insidePixelBarrel3;
 
    } else if( rad < 126.1 && absz < 400.5 ) {
      vertex_pattern = aroundPixelBarrel3;
 
    } else if( rad < 290 && absz < 749.0 ) {
      vertex_pattern = outsidePixelBarrel3_and_insideSctBarrel0;
 
    } else if( rad < 315 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel0;
 
    } else if( rad < 360 && absz < 749.0 ) {
      vertex_pattern = outsideSctBarrel0_and_insideSctBarrel1;
 
    } else if( rad < 390 && absz < 749.0 ) {
      vertex_pattern = aroundSctBarrel1;
 
    } else {
    }
 
 
    if( vertex_pattern == insideBeamPipe ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
 
    }
 
 
    else if( vertex_pattern == insidePixelBarrel1 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel1 ) {
 
      // require nothing for PixelBarrel1
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel1_and_insidePixelBarrel2 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel2)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundPixelBarrel2 ) {
 
      // require nothing for PixelBarrel2
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel2_and_insidePixelBarrel3 ) {
 
      if( ! (pattern & (1<<Trk::pixelBarrel3)) ) return false;
    }
 
    else if( vertex_pattern == aroundPixelBarrel3 ) {
 
      // require nothing for PixelBarrel3
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
    }
 
 
    else if( vertex_pattern == outsidePixelBarrel3_and_insideSctBarrel0 ) {
 
      if( ! (pattern & (1<<Trk::sctBarrel0)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel0 ) {
 
      // require nothing for SctBarrel0
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == outsideSctBarrel0_and_insideSctBarrel1 ) {
 
      if( ! (pattern & (1<<Trk::sctBarrel1)) ) return false;
    }
 
 
    else if( vertex_pattern == aroundSctBarrel1 ) {
      // require nothing for SctBarrel1
      if( ! (pattern & (1<<Trk::sctBarrel2)) ) return false;
    }
 
    return true;
  }
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::patternCheck( const uint32_t& pattern, const Amg::Vector3D& vertex ) {
    bool flag = false;
 
    if( m_jp.geoModel == VKalVrtAthena::GeoModel::Run2 ) {
      flag = patternCheckRun2( pattern, vertex );
    } else if( m_jp.geoModel == VKalVrtAthena::GeoModel::Run1 ) {
      flag = patternCheckRun1( pattern, vertex );
    }
 
    return flag;
  }
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::patternCheckOuterOnly( const uint32_t& pattern, const Amg::Vector3D& vertex ) {
    bool flag = false;
 
    if( m_jp.geoModel == VKalVrtAthena::GeoModel::Run2 ) {
      flag = patternCheckRun2OuterOnly( pattern, vertex );
    } else if( m_jp.geoModel == VKalVrtAthena::GeoModel::Run1 ) {
      flag = patternCheckRun1OuterOnly( pattern, vertex );
    }
 
    return flag;
  }
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::checkTrackHitPatternToVertex( const xAOD::TrackParticle *trk, const Amg::Vector3D& vertex )
  {
 
    const uint32_t pattern = trk->hitPattern();
 
    return patternCheck( pattern, vertex );
 
  }
 
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::checkTrackHitPatternToVertexOuterOnly( const xAOD::TrackParticle *trk, const Amg::Vector3D& vertex )
  {
 
    const uint32_t pattern = trk->hitPattern();
 
    return patternCheckOuterOnly( pattern, vertex );
 
  }
 
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::checkTrackHitPatternToVertexByExtrapolationAssist( const xAOD::TrackParticle *trk, const Amg::Vector3D& vertex )
  {
 
    if( m_extrapolatedPatternBank.find( trk ) == m_extrapolatedPatternBank.end() ) {
 
      std::unique_ptr<ExtrapolatedPattern> exPattern_along( extrapolatedPattern( trk, Trk::alongMomentum ) );
 
      m_extrapolatedPatternBank.emplace( trk, std::make_pair( std::move(exPattern_along), nullptr ) );
 
    }
 
    if( vertex.perp() < 31.0 ) {
      double dphi = trk->phi() - vertex.phi();
      while( dphi >  TMath::Pi() ) { dphi -= TMath::TwoPi(); }
      while( dphi < -TMath::Pi() ) { dphi += TMath::TwoPi(); }
      if( cos(dphi) < -0.8 ) return false;
    }
 
    auto& exPattern = m_extrapolatedPatternBank.at( trk );
 
    using LayerCombination = std::vector<int>;
 
    std::map<LayerCombination, unsigned> layerMap;
    if( layerMap.empty() ) {
      layerMap[ { 1, 0, 0 } ] = Trk::pixelBarrel0;
      layerMap[ { 1, 0, 1 } ] = Trk::pixelBarrel1;
      layerMap[ { 1, 0, 2 } ] = Trk::pixelBarrel2;
      layerMap[ { 1, 0, 3 } ] = Trk::pixelBarrel3;
 
      layerMap[ { 1, 2, 0 } ] = Trk::pixelEndCap0;
      layerMap[ { 1, 2, 1 } ] = Trk::pixelEndCap1;
      layerMap[ { 1, 2, 2 } ] = Trk::pixelEndCap2;
      layerMap[ { 1,-2, 0 } ] = Trk::pixelEndCap0;
      layerMap[ { 1,-2, 1 } ] = Trk::pixelEndCap1;
      layerMap[ { 1,-2, 2 } ] = Trk::pixelEndCap2;
 
      layerMap[ { 2, 0, 0 } ] = Trk::sctBarrel0;
      layerMap[ { 2, 0, 1 } ] = Trk::sctBarrel1;
      layerMap[ { 2, 0, 2 } ] = Trk::sctBarrel2;
      layerMap[ { 2, 0, 3 } ] = Trk::sctBarrel3;
 
      layerMap[ { 2, 2, 0 } ] = Trk::sctEndCap0;
      layerMap[ { 2, 2, 1 } ] = Trk::sctEndCap1;
      layerMap[ { 2, 2, 2 } ] = Trk::sctEndCap2;
      layerMap[ { 2, 2, 3 } ] = Trk::sctEndCap3;
      layerMap[ { 2, 2, 4 } ] = Trk::sctEndCap4;
      layerMap[ { 2, 2, 5 } ] = Trk::sctEndCap5;
      layerMap[ { 2, 2, 6 } ] = Trk::sctEndCap6;
      layerMap[ { 2, 2, 7 } ] = Trk::sctEndCap7;
      layerMap[ { 2, 2, 8 } ] = Trk::sctEndCap8;
      layerMap[ { 2,-2, 0 } ] = Trk::sctEndCap0;
      layerMap[ { 2,-2, 1 } ] = Trk::sctEndCap1;
      layerMap[ { 2,-2, 2 } ] = Trk::sctEndCap2;
      layerMap[ { 2,-2, 3 } ] = Trk::sctEndCap3;
      layerMap[ { 2,-2, 4 } ] = Trk::sctEndCap4;
      layerMap[ { 2,-2, 5 } ] = Trk::sctEndCap5;
      layerMap[ { 2,-2, 6 } ] = Trk::sctEndCap6;
      layerMap[ { 2,-2, 7 } ] = Trk::sctEndCap7;
      layerMap[ { 2,-2, 8 } ] = Trk::sctEndCap8;
    }
 
    enum { position=0, detector=1, bec=2, layer=3, isGood=4 };
 
    // Lambda!
    auto getDetectorType = [&]( const ExtrapolatedPoint& point ) -> unsigned {
 
      const LayerCombination comb { std::get<detector>( point ), std::get<bec>( point ), std::get<layer>( point ) };
 
      for( auto& pair : layerMap ) {
        if( pair.first == comb ) {
          return pair.second;
        }
      }
 
      return AlgConsts::invalidUnsigned;
    };
 
    uint32_t disabledPattern { 0 };
 
    // Loop over extrapolated points (along direction)
    auto& exPattern_along = *( exPattern.first  );
 
    for( auto itr = exPattern_along.begin(); itr != exPattern_along.end(); ++itr ) {
      if( std::next( itr ) == exPattern_along.end() ) continue;
 
      const auto& point = *itr;
 
      ATH_MSG_VERBOSE( " > " <<  __FUNCTION__ << ": isGood = " << std::get<isGood>( point ) );
 
      if( !std::get<isGood>( point ) ) {
        const auto& detectorType = getDetectorType( point );
        disabledPattern += (1 << detectorType);
      }
    }
 
    uint32_t hitPattern      = trk->hitPattern();
    uint32_t modifiedPattern = disabledPattern | hitPattern;
 
    std::string msg = "Disabled hit pattern: ";
    for( unsigned i=0; i<Trk::numberOfDetectorTypes; i++) {
      msg += Form("%u", ( disabledPattern >> i ) & 1 );
    }
    ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": " << msg );
 
    msg = "Recorded hit pattern: ";
    for( unsigned i=0; i<Trk::numberOfDetectorTypes; i++) {
      msg += Form("%u", ( hitPattern >> i ) & 1 );
    }
    ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": " << msg );
 
    return patternCheck( modifiedPattern, vertex );
 
  }
 
 
  //____________________________________________________________________________________________________
  bool VrtSecInclusive::passedFakeReject( const Amg::Vector3D& FitVertex,
            const xAOD::TrackParticle *itrk,
            const xAOD::TrackParticle *jtrk  )
  {
 
    const bool& check_itrk = ( this->*m_patternStrategyFuncs[m_checkPatternStrategy] )( itrk, FitVertex );
    const bool& check_jtrk = ( this->*m_patternStrategyFuncs[m_checkPatternStrategy] )( jtrk, FitVertex );
 
    return ( check_itrk && check_jtrk );
 
  }
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::removeInconsistentTracks( WrkVrt& wrkvrt )
  {
 
    const auto& vertex = wrkvrt.vertex;
 
    std::map< std::deque<long int>*, std::vector<const xAOD::TrackParticle*>& > indexMap
    {
      { &(wrkvrt.selectedTrackIndices), m_selectedTracks }, { &(wrkvrt.associatedTrackIndices), m_associatedTracks }
    };
 
    for( auto& pair : indexMap ) {
 
      auto* indices = pair.first;
      auto& tracks  = pair.second;
 
      auto newEnd = std::remove_if( indices->begin(), indices->end(),
                                    [&]( auto& index ) {
                                      bool isConsistent = (this->*m_patternStrategyFuncs[m_checkPatternStrategy] )( tracks.at(index), vertex );
                                      return !isConsistent;
                                    } );
 
      indices->erase( newEnd, indices->end() );
 
    }
 
  }
 
 
  //____________________________________________________________________________________________________
  void VrtSecInclusive::dumpTruthInformation() {
 
    const xAOD::EventInfo*              eventInfo      { nullptr };
    const xAOD::TruthParticleContainer* truthParticles { nullptr };
    const xAOD::TruthVertexContainer*   truthVertices  { nullptr };
 
    auto sc0 = evtStore()->retrieve( eventInfo, "EventInfo" );
    if( sc0.isFailure() ) { return; }
 
    if( !eventInfo->eventType( xAOD::EventInfo::IS_SIMULATION ) ) {
      return;
    }
 
    auto sc1 = evtStore()->retrieve( truthParticles, "TruthParticles" );
    if( sc1.isFailure() ) { return; }
 
    auto sc2 = evtStore()->retrieve( truthVertices, "TruthVertices" );
    if( sc2.isFailure() ) { return; }
 
    if( !truthParticles ) { return; }
    if( !truthVertices  ) { return; }
 
    m_tracingTruthVertices.clear();
 
    std::vector<const xAOD::TruthParticle*> truthSvTracks;
 
    // truth particle selection functions
 
    auto selectNone = [](const xAOD::TruthVertex*) ->bool { return false; };
 
    auto selectRhadron = [](const xAOD::TruthVertex* truthVertex ) -> bool {
      if( truthVertex->nIncomingParticles() != 1 )                      return false;
      if( !truthVertex->incomingParticle(0) )                           return false;
      if( abs(truthVertex->incomingParticle(0)->pdgId()) < 1000000 )    return false;
      if( abs(truthVertex->incomingParticle(0)->pdgId()) > 1000000000 ) return false; // Nuclear codes, e.g. deuteron
      // neutralino in daughters
      bool hasNeutralino = false;
      for( unsigned ip = 0; ip < truthVertex->nOutgoingParticles(); ip++ ) {
        const auto* p = truthVertex->outgoingParticle(ip);
        if( abs( p->pdgId() ) == 1000022 ) {
          hasNeutralino = true;
          break;
        }
      }
      return hasNeutralino;
    };
 
    auto selectHNL = [](const xAOD::TruthVertex* truthVertex ) -> bool {
      if( truthVertex->nIncomingParticles() != 1 )                      return false;
      if( !truthVertex->incomingParticle(0) )                           return false;
      if( abs(truthVertex->incomingParticle(0)->pdgId()) != 50 )        return false;
      return true;
    };
 
    auto selectHiggs = [](const xAOD::TruthVertex* truthVertex ) -> bool {
      if( truthVertex->nIncomingParticles() != 1 )                      return false;
      if( !truthVertex->incomingParticle(0) )                           return false;
      if( abs(truthVertex->incomingParticle(0)->pdgId()) != 36 )        return false;
      return true;
    };
 
    auto selectKshort = [](const xAOD::TruthVertex* truthVertex ) -> bool {
      if( truthVertex->nIncomingParticles() != 1 )                      return false;
      if( !truthVertex->incomingParticle(0) )                           return false;
      if( abs(truthVertex->incomingParticle(0)->pdgId()) != 310 )       return false;
      return true;
    };
 
    auto selectBhadron = [](const xAOD::TruthVertex* truthVertex ) -> bool {
      if( truthVertex->nIncomingParticles() != 1 )                      return false;
      if( !truthVertex->incomingParticle(0) )                           return false;
      if( abs(truthVertex->incomingParticle(0)->pdgId()) <= 500 || abs(truthVertex->incomingParticle(0)->pdgId()) >= 600 ) return false;
      return true;
    };
 
    auto selectHadInt = [](const xAOD::TruthVertex* truthVertex ) -> bool {
      if( truthVertex->nIncomingParticles() != 1 )                      return false;
      if( !truthVertex->incomingParticle(0) )                           return false;
 
      const auto* parent = truthVertex->incomingParticle(0);
      if( parent->isLepton() )                                          return false;
 
      TLorentzVector p4sum_in;
      TLorentzVector p4sum_out;
      for( unsigned ip = 0; ip < truthVertex->nIncomingParticles(); ip++ ) {
        const auto* particle = truthVertex->incomingParticle(ip);
        TLorentzVector p4; p4.SetPtEtaPhiM( particle->pt(), particle->eta(), particle->phi(), particle->m() );
        p4sum_in += p4;
      }
      for( unsigned ip = 0; ip < truthVertex->nOutgoingParticles(); ip++ ) {
        const auto* particle = truthVertex->outgoingParticle(ip);
        TLorentzVector p4; p4.SetPtEtaPhiM( particle->pt(), particle->eta(), particle->phi(), particle->m() );
        p4sum_out += p4;
      }
      return p4sum_out.E() - p4sum_in.E() >= 100.;
    };
 
 
 
    using ParticleSelectFunc = bool (*)(const xAOD::TruthVertex*);
    std::map<std::string, ParticleSelectFunc> selectFuncs { { "",        selectNone    },
                                                            { "Kshort",  selectKshort  },
                                                            { "Bhadron", selectBhadron },
                                                            { "Rhadron", selectRhadron },
                                                            { "HNL",     selectHNL     },
                                                            { "Higgs",   selectHiggs   },
                                                            { "HadInt",  selectHadInt  }  };
 
 
    if( selectFuncs.find( m_jp.truthParticleFilter ) == selectFuncs.end() ) {
      ATH_MSG_WARNING( " > " << __FUNCTION__ << ": invalid function specification: " << m_jp.truthParticleFilter );
      return;
    }
 
    auto selectFunc = selectFuncs.at( m_jp.truthParticleFilter );
 
    // loop over truth vertices
    for( const auto *truthVertex : *truthVertices ) {
      if( selectFunc( truthVertex ) ) {
        m_tracingTruthVertices.emplace_back( truthVertex );
        std::string msg;
        msg += Form("pdgId = %d, (r, z) = (%.2f, %.2f), ", truthVertex->incomingParticle(0)->pdgId(), truthVertex->perp(), truthVertex->z());
        msg += Form("nOutgoing = %lu, ", truthVertex->nOutgoingParticles() );
        msg += Form("mass = %.3f GeV, pt = %.3f GeV", truthVertex->incomingParticle(0)->m()/1.e3, truthVertex->incomingParticle(0)->pt()/1.e3 );
        ATH_MSG_DEBUG( " > " << __FUNCTION__ << ": " << msg );
      }
    }
 
    if( m_jp.FillHist ) {
      for( const auto* truthVertex : m_tracingTruthVertices ) {
        m_hists["nMatchedTruths"]->Fill( 0., truthVertex->perp() );
      }
    }
 
  }
 
} // end of namespace VKalVrtAthena