ReVertex.cxx

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/*
  Copyright (C) 2002-2018 CERN for the benefit of the ATLAS collaboration
*/
// ****************************************************************************
// ----------------------------------------------------------------------------
// ReVertex
//
// Konstantin Beloborodov <Konstantin.Beloborodov@cern.ch>
//
// ----------------------------------------------------------------------------
// ****************************************************************************
#include "DerivationFrameworkBPhys/ReVertex.h"
#include "xAODTracking/VertexContainer.h"
#include "xAODTracking/VertexAuxContainer.h"
#include "JpsiUpsilonTools/PrimaryVertexRefitter.h"
#include "JpsiUpsilonTools/JpsiUpsilonCommon.h"
 
#include "TrkVertexAnalysisUtils/V0Tools.h"
#include "DerivationFrameworkBPhys/BPhysPVTools.h"
#include "TrkVertexFitterInterfaces/IVertexFitter.h"
#include "TrkVKalVrtFitter/TrkVKalVrtFitter.h"
#include "InDetConversionFinderTools/VertexPointEstimator.h"
#include "xAODBPhys/BPhysHypoHelper.h"
 
using namespace DerivationFramework;
 
ReVertex::ReVertex(const std::string& t,
                   const std::string& n,
                   const IInterface* p) :
    AthAlgTool(t,n,p), m_vertexEstimator("InDet::VertexPointEstimator"), m_iVertexFitter("Trk::TrkVKalVrtFitter"),
    m_massConst(0.),
    m_totalMassConst(0.),
    m_v0Tools("Trk::V0Tools"),
    m_pvRefitter("Analysis::PrimaryVertexRefitter", this),
    m_doMassConst(false),
    m_vertexFittingWithPV(false),
    m_chi2cut(-1.0),
    m_trkDeltaZ(-1.0),
    m_useAdditionalTrack(false)
{
 
    declareInterface<DerivationFramework::IAugmentationTool>(this);
    declareProperty("TrackIndices", m_TrackIndices);
    declareProperty("TrkVertexFitterTool", m_iVertexFitter);
    declareProperty("VertexPointEstimator",m_vertexEstimator);
 
    declareProperty("OutputVtxContainerName", m_OutputContainerName);
    declareProperty("InputVtxContainerName", m_inputContainerName);
    declareProperty("TrackContainerName", m_trackContainer = "InDetTrackParticles");
    declareProperty("UseVertexFittingWithPV", m_vertexFittingWithPV);
 
    declareProperty("HypothesisNames",m_hypoNames);
   
    declareProperty("V0Tools"               , m_v0Tools);
    declareProperty("PVRefitter"            , m_pvRefitter);
    declareProperty("PVContainerName"       , m_pvContainerName        = "PrimaryVertices");
    declareProperty("RefPVContainerName"    , m_refPVContainerName     = "RefittedPrimaryVertices");
 
    declareProperty("UseMassConstraint", m_doMassConst);
    declareProperty("VertexMass", m_totalMassConst);
    declareProperty("SubVertexMass", m_massConst);
    declareProperty("MassInputParticles", m_trkMasses);
    declareProperty("SubVertexTrackIndices", m_indices);
   
    declareProperty("UseAdditionalTrack", m_useAdditionalTrack);
 
    declareProperty("RefitPV"               , m_refitPV                = false);
    //This parameter will allow us to optimize the number of PVs under consideration as the probability
    //of a useful primary vertex drops significantly the higher you go
    declareProperty("MaxPVrefit"            , m_PV_max                = 1000);
    declareProperty("DoVertexType"          , m_DoVertexType           = 7);
    // minimum number of tracks for PV to be considered for PV association
    declareProperty("MinNTracksInPV"        , m_PV_minNTracks          = 0);
    declareProperty("Do3d"        , m_do3d          = false);
    declareProperty("AddPVData"        , m_AddPVData          = true);
    declareProperty("StartingPoint0"        , m_startingpoint0     = false);
    declareProperty("BMassUpper",m_BMassUpper = std::numeric_limits<double>::max() );
    declareProperty("BMassLower",m_BMassLower = std::numeric_limits<double>::min() );
    declareProperty("Chi2Cut",m_chi2cut = std::numeric_limits<double>::max() );
    declareProperty("TrkDeltaZ",m_trkDeltaZ);
    
    
}
 
StatusCode ReVertex::initialize() {
    ATH_MSG_DEBUG("in initialize()");
    if(m_TrackIndices.empty()) {
        ATH_MSG_FATAL("No Indices provided");
        return StatusCode::FAILURE;
    }
    ATH_CHECK(m_iVertexFitter.retrieve());
    ATH_CHECK(m_v0Tools.retrieve());
    ATH_CHECK(m_pvRefitter.retrieve());
    ATH_CHECK(m_vertexEstimator.retrieve());
    m_VKVFitter = dynamic_cast<Trk::TrkVKalVrtFitter*>(&(*m_iVertexFitter));
    if(m_VKVFitter==nullptr) return StatusCode::FAILURE;
    ATH_CHECK(m_OutputContainerName.initialize());
    ATH_CHECK(m_inputContainerName.initialize());
    ATH_CHECK(m_trackContainer.initialize());
    ATH_CHECK(m_pvContainerName.initialize());
    ATH_CHECK(m_refPVContainerName.initialize());
    ATH_CHECK(m_eventInfo_key.initialize());
    ATH_CHECK(m_RelinkContainers.initialize());
    ATH_CHECK(m_CollectionsToCheck.initialize());
    return StatusCode::SUCCESS;
}
 
 
StatusCode ReVertex::addBranches() const {
    const EventContext& ctx = Gaudi::Hive::currentContext();
    SG::WriteHandle<xAOD::VertexContainer> vtxContainer(m_OutputContainerName);
    ATH_CHECK(vtxContainer.record(std::make_unique<xAOD::VertexContainer>(), std::make_unique<xAOD::VertexAuxContainer>()));
 
    const size_t Ntracks = m_TrackIndices.size();
 
    SG::ReadHandle<xAOD::VertexContainer> InVtxContainer(m_inputContainerName);
    SG::ReadHandle<xAOD::TrackParticleContainer> importedTrackCollection(m_trackContainer);
    ATH_CHECK(InVtxContainer.isValid());
    ATH_CHECK(importedTrackCollection.isValid());
    //----------------------------------------------------
    // retrieve primary vertices
    //----------------------------------------------------
    SG::ReadHandle<xAOD::VertexContainer> pvContainer(m_pvContainerName);
    ATH_CHECK(pvContainer.isValid());
 
    std::vector<const xAOD::TrackParticle*> fitpair(Ntracks + m_useAdditionalTrack);
    for(const xAOD::Vertex* v : *InVtxContainer)
    {
 
      bool passed = false;
      for(size_t i=0;i<m_hypoNames.size();i++) {
     xAOD::BPhysHypoHelper onia(m_hypoNames.at(i), v);
     passed |= onia.pass();
      }
      if (!passed && m_hypoNames.size()) continue;
       
        for(size_t i =0; i<Ntracks; i++)
        {
            size_t trackN = m_TrackIndices[i];
            if(trackN >= v->nTrackParticles())
            {
                ATH_MSG_FATAL("Indices exceeds limit in particle");
                return StatusCode::FAILURE;
            }
            fitpair[i] = v->trackParticle(trackN);
        }
 
       if (m_useAdditionalTrack) 
       {
      // Loop over ID tracks, call vertexing
      for (auto trkItr=importedTrackCollection->cbegin(); trkItr!=importedTrackCollection->cend(); ++trkItr) {
         const xAOD::TrackParticle* tp (*trkItr);
         fitpair.back() = nullptr;
         if (Analysis::JpsiUpsilonCommon::isContainedIn(tp,fitpair)) continue; // remove tracks which were used to build J/psi+2Tracks
         fitpair.back() = tp;
 
          // Daniel Scheirich: remove track too far from the Jpsi+2Tracks vertex (DeltaZ cut)
          if(m_trkDeltaZ>0 &&
         std::abs((tp)->z0() + (tp)->vz() - v->z()) > m_trkDeltaZ )
           continue;
         
         fitAndStore(vtxContainer.ptr(),v,InVtxContainer.cptr(),fitpair,importedTrackCollection.cptr(),pvContainer.cptr());
      }
       }
       else 
       {
      fitAndStore(vtxContainer.ptr(),v,InVtxContainer.cptr(),fitpair,importedTrackCollection.cptr(),pvContainer.cptr());
       }
    }
 
    if(m_AddPVData){
     // Give the helper class the ptr to v0tools and beamSpotsSvc to use
     SG::ReadHandle<xAOD::EventInfo> evt(m_eventInfo_key);
     if(not evt.isValid()) ATH_MSG_ERROR("Cannot Retrieve " << evt.key() );
     BPhysPVTools helper(&(*m_v0Tools), evt.cptr());
     helper.SetMinNTracksInPV(m_PV_minNTracks);
     helper.SetSave3d(m_do3d);
 
    if(m_refitPV) {
        //----------------------------------------------------
        // Try to retrieve refitted primary vertices
        //----------------------------------------------------
        SG::WriteHandle<xAOD::VertexContainer> refPvContainer(m_refPVContainerName);
        ATH_CHECK(refPvContainer.record(std::make_unique<xAOD::VertexContainer>(), std::make_unique<xAOD::VertexAuxContainer>()));
 
        if(vtxContainer->size() >0){
          ATH_CHECK(helper.FillCandwithRefittedVertices(vtxContainer.ptr(), pvContainer.cptr(), refPvContainer.ptr(), &(*m_pvRefitter) ,  m_PV_max, m_DoVertexType));
        }
     }else{
         if(vtxContainer->size() >0) ATH_CHECK(helper.FillCandExistingVertices(vtxContainer.ptr(), pvContainer.cptr(), m_DoVertexType));
     }
    }
 
    using Analysis::JpsiUpsilonCommon;
 
    std::vector<const xAOD::TrackParticleContainer*> trackCols;
    for(const auto &str : m_RelinkContainers){
      SG::ReadHandle<xAOD::TrackParticleContainer> handle(str,ctx);
      trackCols.push_back(handle.cptr());
    }
    if(not trackCols.empty()){
       for(xAOD::Vertex* vtx : *vtxContainer){
          try{
            JpsiUpsilonCommon::RelinkVertexTracks(trackCols, vtx);
          }catch(std::runtime_error const& e){
            ATH_MSG_ERROR(e.what());
            return StatusCode::FAILURE;
          }
       }
    }
    return StatusCode::SUCCESS;
}
 
void ReVertex::fitAndStore(xAOD::VertexContainer* vtxContainer,
                    const xAOD::Vertex* v,
                    const xAOD::VertexContainer    *InVtxContainer,
                    const std::vector<const xAOD::TrackParticle*> &inputTracks,
                    const xAOD::TrackParticleContainer* importedTrackCollection,
                    const xAOD::VertexContainer* pvContainer) const
{
   std::unique_ptr<xAOD::Vertex> ptr(fit(inputTracks, importedTrackCollection, nullptr));
   if(!ptr)return;
 
   double chi2DOF = ptr->chiSquared()/ptr->numberDoF();
   ATH_MSG_DEBUG("Candidate chi2/DOF is " << chi2DOF);
   bool chi2CutPassed = (m_chi2cut <= 0.0 || chi2DOF < m_chi2cut);
   if(!chi2CutPassed) { ATH_MSG_DEBUG("Chi Cut failed!");  return; }
   xAOD::BPhysHelper bHelper(ptr.get());//"get" does not "release" still automatically deleted
   bHelper.setRefTrks();
   if (m_trkMasses.size()==inputTracks.size()) {
      TLorentzVector bMomentum = bHelper.totalP(m_trkMasses);
      double bMass = bMomentum.M();
      bool passesCuts = (m_BMassUpper > bMass && bMass > m_BMassLower);
      if(!passesCuts)return;
   }
      
   DerivationFramework::BPhysPVTools::PrepareVertexLinks( ptr.get(), importedTrackCollection );
   std::vector<const xAOD::Vertex*> thePreceding;
   thePreceding.push_back(v);
   if(m_vertexFittingWithPV){
      //
      Analysis::CleanUpVertex closestRefPV = Analysis::JpsiUpsilonCommon::ClosestRefPV(bHelper, pvContainer, &(*m_pvRefitter));
      if (!closestRefPV.get()) return;
      std::unique_ptr<xAOD::Vertex> ptrPV(fit(inputTracks, importedTrackCollection, closestRefPV.get()));
      if(!ptrPV) return;
 
      double chi2DOFPV = ptrPV->chiSquared()/ptrPV->numberDoF();
      ATH_MSG_DEBUG("CandidatePV chi2/DOF is " << chi2DOFPV);
      bool chi2CutPassed = (m_chi2cut <= 0.0 || chi2DOFPV < m_chi2cut);
      if(!chi2CutPassed) { ATH_MSG_DEBUG("Chi Cut failed!");  return; }
      xAOD::BPhysHelper bHelperPV(ptrPV.get());//"get" does not "release" still automatically deleted
      bHelperPV.setRefTrks();
      if (m_trkMasses.size()==inputTracks.size()) {
     TLorentzVector bMomentumPV = bHelperPV.totalP(m_trkMasses);
     double bMass = bMomentumPV.M();
     bool passesCuts = (m_BMassUpper > bMass && bMass > m_BMassLower);
     if(!passesCuts)return;
      }
      
      bHelperPV.setPrecedingVertices(thePreceding, InVtxContainer);
      vtxContainer->push_back(ptrPV.release());
      return; //Don't store other vertex
   }
   bHelper.setPrecedingVertices(thePreceding, InVtxContainer);
   vtxContainer->push_back(ptr.release());
}
 
    // *********************************************************************************
    
    // ---------------------------------------------------------------------------------
    // fit - does the fit
    // ---------------------------------------------------------------------------------
    
xAOD::Vertex* ReVertex::fit(const std::vector<const xAOD::TrackParticle*> &inputTracks,
                const xAOD::TrackParticleContainer* importedTrackCollection,
                const xAOD::Vertex* pv) const
{
   std::unique_ptr<Trk::IVKalState> state = m_VKVFitter->makeState();
   if (m_doMassConst && (m_trkMasses.size()==inputTracks.size())) {
      m_VKVFitter->setMassInputParticles(m_trkMasses, *state);
      if (m_totalMassConst) m_VKVFitter->setMassForConstraint(m_totalMassConst, *state);
      if (m_massConst) m_VKVFitter->setMassForConstraint(m_massConst, m_indices, *state);
   }
   if (pv) {
      m_VKVFitter->setCnstType(8, *state);
      m_VKVFitter->setVertexForConstraint(pv->position().x(),
                      pv->position().y(),
                      pv->position().z(), *state);
      m_VKVFitter->setCovVrtForConstraint(pv->covariancePosition()(Trk::x,Trk::x),
                      pv->covariancePosition()(Trk::y,Trk::x),
                      pv->covariancePosition()(Trk::y,Trk::y),
                      pv->covariancePosition()(Trk::z,Trk::x),
                      pv->covariancePosition()(Trk::z,Trk::y),
                      pv->covariancePosition()(Trk::z,Trk::z), *state );
   }
 
   // Do the fit itself.......
   // Starting point (use the J/psi position)
   const Trk::Perigee& aPerigee1 = inputTracks[0]->perigeeParameters();
   const Trk::Perigee& aPerigee2 = inputTracks[1]->perigeeParameters();
   int sflag = 0;
   int errorcode = 0;
   Amg::Vector3D startingPoint = m_vertexEstimator->getCirclesIntersectionPoint(&aPerigee1,&aPerigee2,sflag,errorcode);
   if (errorcode != 0) {startingPoint(0) = 0.0; startingPoint(1) = 0.0; startingPoint(2) = 0.0;}
   xAOD::Vertex* theResult = m_VKVFitter->fit(inputTracks, startingPoint, *state);
 
   // Added by ASC
   if(theResult != 0){
      std::vector<ElementLink<DataVector<xAOD::TrackParticle> > > newLinkVector;
      for(unsigned int i=0; i< theResult->trackParticleLinks().size(); i++)
    {
       ElementLink<DataVector<xAOD::TrackParticle> > mylink=theResult->trackParticleLinks()[i]; //makes a copy (non-const)
       mylink.setStorableObject( *importedTrackCollection, true);
       newLinkVector.push_back( mylink );
    }
      theResult->clearTracks();
      theResult->setTrackParticleLinks( newLinkVector );
   }
   
   return theResult;
}