T_AnalysisConfigR3_Tier0.h

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/* emacs: this is -*- c++ -*- */
 
#ifndef TrigInDetAnalysisExample_T_AnalysisConfigR3_Tier0_H
#define TrigInDetAnalysisExample_T_AnalysisConfigR3_Tier0_H
 
#include "TrigInDetAnalysis/TIDAEvent.h"
#include "TrigInDetAnalysis/TIDAVertex.h"
#include "TrigInDetAnalysis/TrackSelector.h"     
#include "TrigInDetAnalysisUtils/T_AnalysisConfig.h"
#include "TrigInDetAnalysisUtils/TagNProbe.h"
 
#include "TrigInDetAnalysisExample/AnalysisR3_Tier0.h"
#include "TrigInDetAnalysisExample/VtxAnalysis.h"
#include "TrigInDetAnalysisExample/ChainString.h"
#include "TrigInDetAnalysisExample/TIDATools.h"
 
#include "TTree.h"
#include "TFile.h"
 
#include "GaudiKernel/ToolHandle.h"
#include "AthenaMonitoringKernel/GenericMonitoringTool.h"
 
 
// McParticleEvent includes
#include "McParticleEvent/TruthParticleContainer.h"
 
#include "GeneratorObjects/McEventCollection.h"
#include "AtlasHepMC/GenEvent.h"
#include "AtlasHepMC/GenVertex.h"
#include "AtlasHepMC/GenParticle.h"
 
#include "xAODEventInfo/EventInfo.h"
 
 
 
#include "TrigInDetAnalysis/TIDDirectory.h"
 
#include "TrigInDetAnalysis/Filter_AcceptAll.h"
 
#include "TrigInDetAnalysisUtils/TIDARoiDescriptorBuilder.h"
#include "TrigInDetAnalysisUtils/Filter_etaPT.h"
#include "TrigInDetAnalysisUtils/Filter_RoiSelector.h"
#include "TrigInDetAnalysisUtils/Associator_BestMatch.h"
#include "TrigInDetAnalysisUtils/Filters.h"
 
                            
 
#include "VxVertex/VxContainer.h"
 
#include "TrigSteeringEvent/HLTResult.h"
#include "TrigDecisionTool/ExpertMethods.h"
 
// #include "TrigSteeringEvent/TrigRoiDescriptorCollection.h"
 
#include "xAODTracking/TrackParticle.h"
#include "xAODTracking/TrackParticleContainer.h"
 
#include "TrigCompositeUtils/TrigCompositeUtils.h"
 
 
template<typename T>
std::ostream& operator<<( std::ostream& s, const std::vector<T>& v) { 
  for ( size_t i=0 ; i<v.size() ; i++ ) s << "  " << v[i];
  return s;
}
 
 
template<typename T, typename A=AnalysisR3_Tier0>
class T_AnalysisConfigR3_Tier0 : public T_AnalysisConfig<T> {
 
public:
 
  // Full constructor: test/reference/selection
  // - analysisInstanceName: the name of the analysis chain being created
  // - xxxChainName: the name of the chain to be used as test/reference/selection; must be "StoreGate" in case of direct access to SG containers
  // - xxxType: the type of tracks to be retrieved from the test/reference/selection chain or container
  // - xxxKey:  the key for tracks to be retrieved from the test/reference/selection chain or container
  // - roiInfo: in case the test chain is a real chain, this is used to specify RoI widths; in case the test chain is a fake chain, this is used for RoI position too
  // - all standard operations are performed in loops over 0=test 1=reference 2=selection
  T_AnalysisConfigR3_Tier0(const std::string& analysisInstanceName,
               const std::string& testChainName,      const std::string& testType,      const std::string& testKey,
               const std::string& referenceChainName, const std::string& referenceType, const std::string& referenceKey,
               TrackFilter*     testFilter,  TrackFilter*     referenceFilter, 
               TrackAssociator* associator,
               TrackAnalysis*   analysis,
               TagNProbe*      TnP_tool = 0) :
    T_AnalysisConfig<T>( analysisInstanceName,
             testChainName,      testType,      testKey,
             referenceChainName, referenceType, referenceKey,
             testFilter, referenceFilter,
             associator,
             analysis),
    m_manalysis(0),
    m_useBeamCondSvc(false),
    m_doOffline(true),
    m_doMuons(false),
    m_doElectrons(false),
    m_doTaus(false),
    m_doBjets(false),
    m_doTauThreeProng(false),
    m_tauEtCutOffline(false),
    m_pdgID(0),
    m_parent_pdgID(0),
    m_NRois(0),
    m_NRefTracks(0),
    m_NTestTracks(0),
    m_runPurity(false),
    m_shifter(false),
    m_pTthreshold(0),
    m_first(true),
    m_containTracks(false), 
    m_tnp_flag(false),
    m_monTool(0),
    m_invmass(0),
    m_invmass_obj(0)
  {

 
    m_chainNames.push_back(testChainName);
 
 
    m_TnP_tool = TnP_tool;
    
#if 0
    ChainString& chain = m_chainNames.back(); 
 
    std::cout << "\nT_AnalysisConfigR3_Tier0::name:                " << name() << "\t" << this << std::endl;
    std::cout <<  "T_AnalysisConfigR3_Tier0::chain specification: " << testChainName << " -> " << chain << "\t" << chain.raw() << std::endl;
    std::cout << "\tchain: " << chain.head()    << std::endl;
    std::cout << "\tkey:   " << chain.tail()    << std::endl;
    std::cout << "\troi:   " << chain.roi()     << std::endl;
    std::cout << "\tvtx:   " << chain.vtx()     << std::endl;
    std::cout << "\tte:    " << chain.element() << std::endl;
    std::cout << "\textra: " << chain.extra()   << std::endl;
 
    std::cout << "\tpost:  " << chain.post()          << std::endl; 
    std::cout << "\tpt:    " << chain.postvalue("pt") << std::endl;
 
    std::cout << "\tcontainTracks: " << m_containTracks << std::endl;
 
#endif
    
    m_testType = testType;
 
    if ( m_TnP_tool ) m_tnp_flag = true;
 
  }
 
 
  virtual ~T_AnalysisConfigR3_Tier0() {
    if ( m_TnP_tool )    delete m_TnP_tool;
    if ( m_invmass )     delete m_invmass;
    if ( m_invmass_obj ) delete m_invmass_obj;
  }
 
 
  void initialise() { 
 
    if ( m_tnp_flag ) {
      if ( m_invmass==0 )     m_invmass     = new TIDA::Histogram<float>( monTool(), "invmass" );
      if ( m_invmass_obj==0 ) m_invmass_obj = new TIDA::Histogram<float>( monTool(), "invmass_obj" );
    }
 
    for ( size_t it=0 ; it<m_types.size() ; it++ ) {
      if ( m_types[it]=="" ) m_offline_types.push_back( "InDetTrackParticles" );
      else                   m_offline_types.push_back( m_types[it] );      
    }
 
    if ( m_offline_types.empty() ) m_offline_types.push_back( "InDetTrackParticles" );
 
  }
 
 
  void setRunPurity( bool b ) { m_runPurity=b; }
 
  void setShifter( bool b )    { m_shifter=b; }
 
  void useBeamCondSvc( bool b ) { m_useBeamCondSvc = b; }
 
  void containTracks( bool b ) { m_containTracks = b; }
 
  void setPdgID( int i=0 ) { m_pdgID=i; }
 
  void setParentPdgID( int i=0 ) { m_parent_pdgID=i; }
 
  void setMCTruthRef( bool b ) { m_mcTruth=b; }
 
  void setOfflineRef( bool b ) { m_doOffline=b; }
 
  void setTypes( const std::vector<std::string>& t ) { m_types=t; }
 
  void set_monTool( ToolHandle<GenericMonitoringTool>* m ) { m_monTool=m; }
 
  ToolHandle<GenericMonitoringTool>* monTool() { return m_monTool; }
 
public:
 
  A* m_manalysis;
 
  using T_AnalysisConfig<T>::name;
 
protected:
 
  using T_AnalysisConfig<T>::m_provider;
  using T_AnalysisConfig<T>::m_tdt;
  using T_AnalysisConfig<T>::m_mcTruth;
 
  using T_AnalysisConfig<T>::m_analysis;
 
  using T_AnalysisConfig<T>::m_selectorTest;
  using T_AnalysisConfig<T>::m_selectorRef;
  using T_AnalysisConfig<T>::m_associator;
  using T_AnalysisConfig<T>::m_filters;
  
  virtual void loop() {
 
    const TagNProbe* pTnP_tool = m_TnP_tool;
 
    if( m_provider->msg().level() <= MSG::VERBOSE) {
      m_provider->msg(MSG::VERBOSE) <<  "AnalysisConfigR3_Tier0::loop() for " << T_AnalysisConfig<T>::m_analysisInstanceName <<  endmsg;
    }

    // get (offline) beam position
    //    double xbeam = 0;
    //    double ybeam = 0;
 
#if 0
 
    if ( m_first ) {      
 
      m_first = false;
      
      if ( m_provider->msg().level() <= MSG::VERBOSE ) {
    m_provider->msg(MSG::VERBOSE) << " using beam position\tx=" << xbeam << "\ty=" << ybeam << endmsg;
    
    std::vector<std::string> configuredChains  = (*(m_tdt))->getListOfTriggers("L2_.*, EF_.*, HLT_.*");
    
        for ( unsigned i=0 ; i<configuredChains.size() ; i++ ) {
      //    std::cout << "Configured chain " << configuredChains[i]  << std::endl;
      m_provider->msg(MSG::VERBOSE)  << "Chain " << configuredChains[i]  << endmsg;
    }
      }
    
      //      std::cout << "\tloop() analyse chains " << m_chainNames.size() << std::endl;
    
    }
 
#endif
 
    Filter_True filter;
    
    Filter_etaPT    filter_etaPT( 5, 200 );
    Filter_Combined filter_truth( &filter_etaPT,   &filter_etaPT);
    
    // Filter_Combined filterRef (&filter_offline, &filter_vertex);
 
    int iRefFilter  = 1;
    int iTestFilter = 0;
 
    if ( m_runPurity ) { 
      iRefFilter  = 0;
      iTestFilter = 1;
    }
    
    
    TrackFilter* rfilter = m_filters[iRefFilter][0];
    TrackFilter* tfilter = m_filters[iTestFilter][0];
 
    Filter_Combined filterRef(   rfilter, &filter );
    Filter_Combined filterTest(  tfilter, &filter );
 
    TrigTrackSelector  selectorTruth( &filter_truth, m_pdgID, m_parent_pdgID );
 
    TrigTrackSelector  selectorRef( &filterRef );
    TrigTrackSelector* pselectorRef = &selectorRef;
 
    TrigTrackSelector  selectorTest( &filterTest );
    TrigTrackSelector* pselectorTest = &selectorTest;
    
    if ( m_mcTruth ) pselectorRef = &selectorTruth;


 
    TIDA::Event   event;
    TIDA::Event*  eventp = &event;
 
    double beamline[4] = { 0, 0, 0, 0 }; 
     
    // clear the ntuple TIDA::Event class
    eventp->clear();

 
    const xAOD::EventInfo* pEventInfo = 0;
 
    unsigned           run_number        = 0;
    unsigned long long event_number      = 0;
    unsigned           lumi_block        = 0;
    unsigned           bunch_crossing_id = 0;
    unsigned           time_stamp        = 0;
    double             mu_val            = 0;

    //    std::cout << "\tloop() get EventInfo" << std::endl;
 
    if ( this->template retrieve( pEventInfo, "EventInfo" ).isFailure() ) {
      m_provider->msg(MSG::WARNING) << "Failed to get EventInfo " << endmsg;
    } else {
 
      run_number        = pEventInfo->runNumber();
      event_number      = pEventInfo->eventNumber();
      lumi_block        = pEventInfo->lumiBlock();
      time_stamp        = pEventInfo->timeStamp();
      bunch_crossing_id = pEventInfo->bcid();
      mu_val            = pEventInfo->averageInteractionsPerCrossing();
    }
  
    if(m_provider->msg().level() <= MSG::VERBOSE){
      m_provider->msg(MSG::VERBOSE) << "run "     << run_number
                                    << "\tevent " << event_number
                                    << "\tlb "    << lumi_block << endmsg;
    }
 
    // clear the ntuple TIDA::Event class
    eventp->clear();
 
    eventp->run_number(run_number);
    eventp->event_number(event_number);
    eventp->lumi_block(lumi_block);
    eventp->time_stamp(time_stamp);
    eventp->bunch_crossing_id(bunch_crossing_id);
    eventp->mu(mu_val);

 
    bool analyse = false;
  
    // Check HLTResult
 
    for ( unsigned ichain=0 ; ichain<m_chainNames.size() ; ichain++ ) {
 
      const std::string& chainname = m_chainNames[ichain].head();
 
      if ( chainname == "" ) analyse = true;
      else { 
 
    //Only for trigger chains
    if ( chainname.find("L2")  == std::string::npos &&
         chainname.find("EF")  == std::string::npos &&
         chainname.find("HLT") == std::string::npos ) continue;
    
    if ( m_provider->msg().level() <= MSG::DEBUG ) {
      m_provider->msg(MSG::DEBUG) << "Chain "  << chainname
                      << "\tpass " << (*m_tdt)->isPassed(chainname)
                      << "\tpres " << (*m_tdt)->getPrescale(chainname) << endmsg;
    }

    //  std::cout << "\tChain "  << chainname << "\tpass " << (*m_tdt)->isPassed(chainname)
    //        << "\tpres " << (*m_tdt)->getPrescale(chainname) << std::endl;
    
    if ( (*(m_tdt))->isPassed(chainname) ) analyse = true;
    
      }
 
    }
    
    
    if ( !this->m_keepAllEvents && !analyse ) {
      if(m_provider->msg().level() <= MSG::VERBOSE) {
        m_provider->msg(MSG::VERBOSE) << "No chains passed unprescaled - not processing this event" << endmsg;
      }
      return;
    }
 
    
 
    selectorTruth.clear();
 
    if(m_provider->msg().level() <= MSG::VERBOSE)
      m_provider->msg(MSG::VERBOSE) << "MC Truth flag " << m_mcTruth << endmsg;

 
    std::vector<TIDA::Vertex> vertices;
    std::vector<TIDA::Vertex> vertices_rec;
 
    std::vector<double> refbeamspot;
    std::vector<double> testbeamspot;

 
    m_provider->msg(MSG::VERBOSE) << "fetching AOD Primary vertex container" << endmsg;
 
    if ( !this->select( vertices, "PrimaryVertices" ) ) { 
      m_provider->msg(MSG::VERBOSE) << "could not retrieve the 'PrimaryVertices' vertex collection" << std::endl;
    }

 
    if ( m_mcTruth ) {
      eventp->addChain( "Truth" );
      eventp->back().addRoi(TIDARoiDescriptor());
      eventp->back().back().addTracks(selectorTruth.tracks());
    }

 
    if ( m_doOffline ) {
      for ( unsigned i=0 ; i<vertices.size() ; i++ )  {
        if(m_provider->msg().level() <= MSG::VERBOSE)
          m_provider->msg(MSG::VERBOSE) << "vertex " << i << " " << vertices[i] << endmsg;
        eventp->addVertex(vertices[i]);
      }
    }
 
 

 
    std::vector<TIDA::Track*> offline_tracks;
    std::vector<TIDA::Track*> electron_tracks;
    std::vector<TIDA::Track*> muon_tracks;
 
    std::vector<TIDA::Track*> ref_tracks;
    std::vector<TIDA::Track*> test_tracks;
 
    offline_tracks.clear();
    electron_tracks.clear();
    muon_tracks.clear();
 
    ref_tracks.clear();
    test_tracks.clear();
 
    // offline track retrieval now done once for each chain rather than each roi
    if ( m_provider->msg().level() <= MSG::VERBOSE )
      m_provider->msg(MSG::VERBOSE) << "MC Truth flag " << m_mcTruth << endmsg;
 
    bool foundTruth = false;

 
    if ( m_mcTruth ) {
 
      filter_truth.setRoi( 0 ); // don't filter on RoI yet (or until needed)  
 
      selectorTruth.clear();
 
      if ( m_provider->msg().level() <= MSG::VERBOSE )
    m_provider->msg(MSG::VERBOSE) << "getting Truth" << endmsg;
 
      if ( m_provider->evtStore()->template contains<TruthParticleContainer>("INav4MomTruthEvent") ) {
    //ESD
    this->template selectTracks<TruthParticleContainer>( &selectorTruth, "INav4MomTruthEvent" );
    foundTruth = true;
      }
      else if ( m_provider->evtStore()->template contains<TruthParticleContainer>("SpclMC") ) {
    this->template selectTracks<TruthParticleContainer>( &selectorTruth, "SpclMC");
    foundTruth = true;
      }
      else if ( m_provider->evtStore()->template contains<xAOD::TruthParticleContainer>("TruthParticles") ) {
    this->template selectTracks<xAOD::TruthParticleContainer>( &selectorTruth, "TruthParticles");
    foundTruth = true;
      }
      else if ( m_provider->evtStore()->template contains<TruthParticleContainer>("") ) {
    this->template selectTracks<TruthParticleContainer>( &selectorTruth, "");
    foundTruth = true;
      }
      else
    if ( m_provider->msg().level() <= MSG::VERBOSE ) {
      m_provider->msg(MSG::VERBOSE) << "Truth not found - none whatsoever!" << endmsg;
    }
    }
      
    if ( m_mcTruth && !foundTruth ) {
          
      if ( m_provider->msg().level() <= MSG::VERBOSE ) { 
    m_provider->msg(MSG::VERBOSE) << "getting Truth" << endmsg;
      }

 
      const McEventCollection* mcevent = nullptr;

 
      std::string keys[4] = { "GEN_AOD", "TruthEvent", "", "G4Truth" };
 
      std::string key = "";
 
      bool foundcollection = false;
 
      for ( int ik=0 ; ik<4 ; ik++ ) {
         
    if ( m_provider->msg().level() <= MSG::VERBOSE ) {
      m_provider->msg(MSG::VERBOSE) << "Try McEventCollection: " << keys[ik] << endmsg;
    }
 
    if ( !m_provider->evtStore()->template contains<McEventCollection>(keys[ik]) ) {
      if( m_provider->msg().level() <= MSG::VERBOSE )
        m_provider->msg(MSG::VERBOSE) << "No McEventCollection: " << keys[ik] << endmsg;
      continue;
    }
 
    if ( m_provider->msg().level() <= MSG::VERBOSE )
      m_provider->msg(MSG::VERBOSE) << "evtStore()->retrieve( mcevent, " << keys[ik] << " )" << endmsg;
 
    if ( this->template retrieve( mcevent, keys[ik] ).isFailure() ) {
      if ( m_provider->msg().level() <= MSG::VERBOSE )
        m_provider->msg(MSG::VERBOSE) << "Failed to get McEventCollection: " << keys[ik] << endmsg;
    }
    else {
      key = keys[ik];
      if(m_provider->msg().level() <= MSG::VERBOSE)
        m_provider->msg(MSG::VERBOSE) << "Found McEventCollection: " << key << endmsg;
      foundcollection = true;
      break;
    }
      }

      if ( !foundcollection ) {
    if(m_provider->msg().level() <= MSG::VERBOSE)
      m_provider->msg(MSG::WARNING) << "No MC Truth Collections of any sort, whatsoever!!!" << endmsg;
 
    //    m_tree->Fill();
    //    return StatusCode::FAILURE;
 
    return;
      }
 
      if ( m_provider->msg().level() <= MSG::VERBOSE ) {
    m_provider->msg(MSG::VERBOSE) << "Found McEventCollection: " << key << "\tNevents " << mcevent->size() << endmsg;
      }
 
      McEventCollection::const_iterator evitr = mcevent->begin();
      McEventCollection::const_iterator evend = mcevent->end();
 
      unsigned ie = 0; 
      unsigned ip = 0; 
 
      unsigned ie_ip = 0; 
 
      while ( evitr!=evend ) {
 
    int ipc = 0; 
 
    int pid = HepMC::signal_process_id((*evitr));
 
    //The logic should be clarified here
    if ( pid!=0 ) { 
 
          // For HepMC2-based builds the following two functions return
          // GenEvent::particle_const_iterator
          // while for HepMC3-based builds they return
          // std::vector<HepMC3::ConstGenParticlePtr>::const_iterator
          // see AtlasHepMC/GenEvent.h for function definitions.
          auto pitr(HepMC::begin(**evitr));
          const auto pend(HepMC::end(**evitr));
 
      while ( pitr!=pend ) {
 
        selectorTruth.selectTrack( *pitr++ );
 
        ++ipc;
                
      }
 
    }
    ++ie;
    ++evitr;
 
    if ( ipc>0 ) {
      //      m_provider->msg(MSG::VERBOSE) << "Found " << ie << "\tpid " << pid << "\t with " << ip << " TruthParticles (GenParticles)" << endmsg;
      ++ie_ip;
      ip += ipc;
    }
      }
 
      if(m_provider->msg().level() <= MSG::VERBOSE){
    m_provider->msg(MSG::VERBOSE) << "Found " << ip << " TruthParticles (GenParticles) in " << ie_ip << " GenEvents out of " << ie << endmsg;
    m_provider->msg(MSG::VERBOSE) << "selected " << selectorTruth.size() << " TruthParticles (GenParticles)" << endmsg;
      }
 
      if(selectorTruth.size() > 0) foundTruth = true;
 
      if ( !(ip>0) ) {
    if (m_provider->msg().level() <= MSG::VERBOSE) m_provider->msg(MSG::WARNING) << "NO TRUTH PARTICLES - returning" << endmsg;
    return; 
      }
      
    }
 
    if ( m_doOffline && !m_mcTruth) {
 
      for ( size_t it=0 ; it<m_offline_types.size() ; it++ ) {
    if ( m_provider->evtStore()->template contains<xAOD::TrackParticleContainer>( m_offline_types[it] ) ) {
      this->template selectTracks<xAOD::TrackParticleContainer>( pselectorRef, m_offline_types[it] );
      refbeamspot = this->template getBeamspot<xAOD::TrackParticleContainer>( m_offline_types[it] );
    }
    else { 
      m_provider->msg(MSG::WARNING) << "Offline tracks not found: " << m_offline_types[it] << endmsg;
    }
      }
      
    }

 
    std::unique_ptr<TrackAssociator> associator = m_associator->uclone();
 
    //    std::cout << "\tloop() loop over chains proper ..." << std::endl;

    for ( unsigned ichain=0 ; ichain<m_chainNames.size() ; ichain++ ) {

 
      // std::string& chainname = chains[ichain];
      const std::string& chainname = m_chainNames[ichain].head();
      const std::string&       key = m_chainNames[ichain].tail();
      const std::string&  vtx_name = m_chainNames[ichain].vtx();
  
      // Not used left just in case
      // const std::string&  roi_name = m_chainNames[ichain].roi();
      // const std::string&  te_name = m_chainNames[ichain].element();
      m_pTthreshold = 0;  
 
      if ( m_chainNames[ichain].postcount() ) { 
        std::string ptvalue = m_chainNames[ichain].postvalue("pt");
    if ( ptvalue!="" ) m_pTthreshold = std::stod(ptvalue);
      }
 
 
      unsigned decisiontype = TrigDefs::Physics;
    
      if ( !m_chainNames[ichain].passed() ) decisiontype = TrigDefs::includeFailedDecisions;

      //      if ( decisiontype==TrigDefs::requireDecision ) std::cout << "\tSUTT TrigDefs::requireDecision " << decisiontype << std::endl;
      //      if ( decisiontype==TrigDefs::Physics )         std::cout << "\tSUTT TrigDefs::Physics "         << decisiontype << std::endl;
 
      if ( chainname!="" && m_provider->msg().level() <= MSG::VERBOSE ) {
 
        m_provider->msg(MSG::VERBOSE) << "status for chain " << chainname
                                      << "\tpass "           << (*m_tdt)->isPassed(chainname)
                                      << "\tprescale "       << (*m_tdt)->getPrescale(chainname) << endmsg;
 
        m_provider->msg(MSG::VERBOSE) << "fetching features for chain " << chainname << endmsg;
    
        m_provider->msg(MSG::VERBOSE) << chainname << "\tpassed: " << (*m_tdt)->isPassed( chainname ) << endmsg;
      }

      //      std::cout << "\tstatus for chain " << chainname
      //        << "\tpass "           << (*m_tdt)->isPassed( chainname )
      //        << "\tpassdt "         << (*m_tdt)->isPassed( chainname, decisiontype )
      //        << "\tprescale "       << (*m_tdt)->getPrescale( chainname ) << std::endl;
    
 
      //   m_provider->msg(MSG::INFO) << chainname << "\tpassed: " << (*m_tdt)->isPassed( chainname ) << "\t" << m_chainNames[ichain] << "\trun " << run_number << "\tevent " << event_number << endmsg;
 
 
      if ( chainname!="" && !this->m_keepAllEvents && !(*m_tdt)->isPassed( chainname, decisiontype ) ) continue;

      // Trig::FeatureContainer f = (*m_tdt)->features( chainname, TrigDefs::alsoDeactivateTEs);
     
 
      // tag and probe analysis processes multiple chains passed in the tag and probe tool at once so loop over vector of chains
      std::vector<std::string> chainNames ;
            
      if ( !m_tnp_flag ) {
    chainNames.push_back(m_chainNames[ichain].raw()) ;
      }
      else {
    chainNames.push_back(pTnP_tool->tag());
    chainNames.push_back(pTnP_tool->probe());
      }
 
      // loop over new chainNames vector but doing the same stuff
      for ( size_t i=0 ; i<chainNames.size() ; i++ ) {
 
    ChainString chainConfig = chainNames[i] ;
    std::string chainName   = chainConfig.head();
    
    eventp->addChain( chainNames[i] ); 
    
    TIDA::Chain& chain = eventp->back();
    
    if ( chainName == "" ) { 

 
      pselectorTest->clear();
    
 
      //      TIDARoiDescriptor roifs(true);
        
      // chain.addRoi( roifs );
 
      chain.addRoi( TIDARoiDescriptor(true) );
    
      if ( m_provider->evtStore()->template contains<xAOD::TrackParticleContainer>(key) ) {
        this->template selectTracks<xAOD::TrackParticleContainer>( pselectorTest, key );
        refbeamspot = this->template getBeamspot<xAOD::TrackParticleContainer>( key );
      }
 
      const std::vector<TIDA::Track*>& testtracks = pselectorTest->tracks();
 
      chain.back().addTracks(testtracks);
    
      if ( vtx_name!="" ) { 
      
 
        m_provider->msg(MSG::VERBOSE) << "\tFetch xAOD::VertexContainer with key " << vtx_name << endmsg;
 
        std::vector<TIDA::Vertex> tidavertices;
 
        if ( this->select( tidavertices, vtx_name ) ) chain.back().addVertices( tidavertices );  
      }
    
 
      //      if ( roiInfo ) delete roiInfo;
 
    }
    else {

      
      //std::string roi_key = m_chainNames[ichain].roi();
 
      std::string roi_key = chainConfig.roi();
    
      unsigned feature_type =TrigDefs::lastFeatureOfType;
 
      if ( roi_key!="" ) feature_type= TrigDefs::allFeaturesOfType;

      
      int leg = -1;
      
      if ( chainConfig.element()!="" ) { 
        leg = std::atoi(chainConfig.element().c_str());
      }
      
      std::string rgex = roi_key;
 
      std::vector< TrigCompositeUtils::LinkInfo<TrigRoiDescriptorCollection> > rois = 
        (*m_tdt)->template features<TrigRoiDescriptorCollection>( Trig::FeatureRequestDescriptor( chainName,  
                                                      decisiontype,
                                                      rgex, 
                                                      feature_type,
                                                      "roi", 
                                                      leg ) );
      
 
      if ( rois.empty() ) {
        if ( !rgex.empty() ) {
          rgex += "_probe";
          rois = (*m_tdt)->template features<TrigRoiDescriptorCollection>( Trig::FeatureRequestDescriptor( chainName,
                                                           decisiontype,
                                                           rgex,
                                                           feature_type,
                                                           "roi",
                                                           leg ) );
        }
      }
 
      int iroi = 0; 
      
      for ( const TrigCompositeUtils::LinkInfo<TrigRoiDescriptorCollection>& roi_info : rois ) {
 
        iroi++;

 
        if ( roi_key=="SuperRoi" && iroi>1 ) continue; 
    
        //    std::cout << "\troi: get link " << roi_key << " ..." << std::endl;
 
        const ElementLink<TrigRoiDescriptorCollection> roi_link = roi_info.link;

        if ( roi_key!="" && roi_link.dataID()!=rgex ) continue;

        if ( !roi_link.isValid() ) continue;
 
        const TrigRoiDescriptor* const* roiptr = roi_link.cptr();
 
        if ( roiptr == 0 ) continue;
        

        //    std::cout << "\troi: link deref ..." << *roiptr << std::endl;
 
        if (m_provider->msg().level() <= MSG::VERBOSE) {
          m_provider->msg(MSG::VERBOSE) << " RoI descriptor for seeded chain " << chainname << " " << **roiptr << endmsg;
        }
     
        TIDARoiDescriptor* roiInfo = new TIDARoiDescriptor( TIDARoiDescriptorBuilder(**roiptr) );
     
        //    if ( dbg ) std::cout << "\troi " << iroi << " " << *roiInfo << std::endl;

 
        pselectorTest->clear();
 
        if ( this->template selectTracks<xAOD::TrackParticleContainer>( pselectorTest, roi_link,  key ) ) { } 
 
        // beamspot stuff not needed for xAOD::TrackParticles

 
        chain.addRoi( *roiInfo );
    
 
        const std::vector<TIDA::Track*>& testtracks = pselectorTest->tracks();
 
        chain.back().addTracks(testtracks);
    

      
        if ( vtx_name!="" ) { 
 
          std::vector<TIDA::Vertex> tidavertices;
 
          this->select( tidavertices, roi_link, vtx_name );
 
          chain.back().addVertices( tidavertices );
        
        } 
      
 
#if 0
        if ( dbg ) { 
          std::cout << "\tTIDA analysis for chain: " << chainname << "\t key: " << key << "\t" << **roiptr << std::endl;
          std::cout << "\tcollections: " << chain.back() << std::endl; 
        }
#endif
      
        delete roiInfo;
      
      }
 
 
    } 
 
      } // end of loop chainNames vector loop
    
    
      if ( m_provider->msg().level() <= MSG::VERBOSE ) {
    m_provider->msg(MSG::VERBOSE) << "event: " << *eventp << endmsg;
      }
 
    }
 
    // close previous loop over chains and open new one
    
    for ( unsigned ichain=0 ; ichain<eventp->size() ; ichain++ ) {
      
      TIDA::Chain& chain = (*eventp)[ichain];
      ChainString chainConfig(chain.name());        
      const std::string&  vtx_name = chainConfig.vtx();
 
      // skip tag chains to avoid performing standard analysis on them (done for tnp at the same time as probes)
      if ( m_tnp_flag && chainConfig.extra().find("_tag")!=std::string::npos ) continue ;
      
      std::vector<TIDA::Roi*> rois ;
      
      if (m_tnp_flag) {
    // needs to be done AFTER retrieving offline tracks as pselectorRef passed as arguement, hence restructuring
    rois = pTnP_tool->GetRois( eventp->chains(), pselectorRef, &filterRef, m_invmass, m_invmass_obj );
      }
      else {
        rois.reserve( chain.size() );
        for ( size_t ir=0 ; ir<chain.size() ; ir++ ) {
      rois.push_back( &(chain.rois()[ir]) );
    }
      }
 
      // now loop over the rois (again)
 
      for ( unsigned iroi=0 ; iroi<rois.size() ; iroi++ ) {
 
    if ( this->filterOnRoi() ) { 
      filterRef.setRoi( &(rois.at(iroi)->roi() ) ); 
      filterRef.containtracks( m_containTracks ); 
    }
    else filterRef.setRoi( 0 );
    
    test_tracks.clear();
    
    // this block is before the track retrieval in the original, is it working the same here?
    
 
        if ( m_provider->msg().level() <= MSG::VERBOSE )
          m_provider->msg(MSG::VERBOSE) << "MC Truth flag " << m_mcTruth << endmsg;
 
    if ( m_mcTruth ) {
      if ( this->filterOnRoi() )  filter_truth.setRoi( &(rois.at(iroi)->roi() ) );
      ref_tracks = pselectorRef->tracks(&filter_truth);
    }
    else { // ie. if ( m_doOffline )
      ref_tracks = pselectorRef->tracks(&filterRef) ; 
    }
    
    if ( m_provider->msg().level() <= MSG::VERBOSE ) {
      m_provider->msg(MSG::VERBOSE) << "ref tracks.size() " << pselectorRef->tracks().size() << endmsg;
      for ( int ii=pselectorRef->tracks().size() ; ii-- ; ) {
        m_provider->msg(MSG::VERBOSE) << "  ref track " << ii << " " << *pselectorRef->tracks()[ii] << endmsg;
      }
    }
 
        test_tracks.clear();
 
 
        for ( unsigned itrk=0 ; itrk<rois.at(iroi)->tracks().size() ; itrk++ ) {
          test_tracks.push_back(&(rois.at(iroi)->tracks().at(itrk)));
        }   
    
    //  std::cout << "sutt track multiplicities: offline " << offline_tracks.size() << "\ttest " << test_tracks.size() << std::endl;

    
    beamline[0] = pselectorTest->getBeamX();
    beamline[1] = pselectorTest->getBeamY();
    beamline[2] = pselectorTest->getBeamZ();
 
    beamline[3] = vertices.size();

    //  m_manalysis->setvertices( vertices.size() );  /// what is this for ??? /// is this thread safe ??? 

 
    if ( m_runPurity ) {
 
      if ( this->getUseHighestPT() ) HighestPTOnly( test_tracks );
 
      if ( m_pTthreshold>0 ) FilterPT( test_tracks, m_pTthreshold );

      m_NRois++;
      m_NRefTracks  += test_tracks.size();
      m_NTestTracks += ref_tracks.size();

      associator->match( test_tracks, ref_tracks );
      
      m_manalysis->execute( test_tracks, ref_tracks, associator.get(), eventp, beamline );
 
    }
    else { 

      if ( this->getUseHighestPT() ) HighestPTOnly( ref_tracks );

      
      if ( m_pTthreshold>0 )         FilterPT( ref_tracks, m_pTthreshold );

      // if ( ref_tracks.size()==0 ) continue;

      m_NRois++;
      m_NRefTracks  += ref_tracks.size();
      m_NTestTracks += test_tracks.size();

      associator->match( ref_tracks, test_tracks );
    
      //      m_manalysis->setroi( &rois.at(iroi)->roi() );  
      m_manalysis->execute( ref_tracks, test_tracks, associator.get(), eventp, beamline, &(rois.at(iroi)->roi()) );
 
      if ( vtx_name!="" ) { 
        std::vector<TIDA::Vertex> vr = rois.at(iroi)->vertices();
        std::vector<TIDA::Vertex*> vtx_rec;    
        for ( unsigned iv=0 ; iv<vr.size() ; iv++ ) vtx_rec.push_back( &vr[iv] );
 
        std::vector<TIDA::Vertex*> vtx;
        if ( this->getVtxIndex()<0 ) { 
          for ( unsigned iv=0 ; iv<vertices.size() ; iv++ ) vtx.push_back( &vertices[iv] );
        }
        else { 
          if ( vertices.size()>unsigned(this->getVtxIndex()) ) vtx.push_back( &vertices[this->getVtxIndex()] );
        }
 
        m_manalysis->execute_vtx( vtx, vtx_rec, eventp );
      }
 
    }
 
    if ( m_manalysis->debug() ) { 
      m_provider->msg(MSG::INFO) << "Missing track for " << m_chainNames[ichain]  
                     << "\trun "             << run_number 
                     << "\tevent "           << event_number 
                     << "\tlb "              << lumi_block << endmsg;     
    }
 
      }
 
    }
    
    //    delete associator;
 
    if ( m_provider->msg().level() <= MSG::VERBOSE ) {
      m_provider->msg(MSG::VERBOSE) << "\n\nEvent " << *eventp << endmsg;
    }
 
  }
 
 
 
  virtual void book() {
    
    if(m_provider->msg().level() <= MSG::VERBOSE)
      m_provider->msg(MSG::VERBOSE) << "AnalysisConfigR3_Tier0::book() " << name() << endmsg;
 
    // get the TriggerDecisionTool
 
    if( m_tdt->retrieve().isFailure() ) {
      if(m_provider->msg().level() <= MSG::ERROR)
        m_provider->msg(MSG::ERROR) << " Unable to retrieve the TrigDecisionTool: Please check job options file" << endmsg;
      return;
    }
 
    if(m_provider->msg().level() <= MSG::VERBOSE) {
      m_provider->msg(MSG::VERBOSE) << " Successfully retrieved the TrigDecisionTool"  << endmsg;
    }
 

    if (m_provider->msg().level() <= MSG::VERBOSE) {
      std::vector<std::string> configuredChains  = (*(m_tdt))->getListOfTriggers("L2_.*, EF_.*, HLT_.*");
 
      m_provider->msg(MSG::VERBOSE)  << "Configured chains" << endmsg;
      for ( unsigned i=0 ; i<configuredChains.size() ; i++ ) {
        if( m_provider->msg().level() <= MSG::VERBOSE)
          m_provider->msg(MSG::VERBOSE)  << " Chain " << configuredChains[i]  << endmsg;
      }
    }
 
 
    for ( unsigned ic=0 ; ic<m_chainNames.size() ; ic++ ) {
 
      if ( ic>0 ) { 
    m_provider->msg(MSG::WARNING) << "more than one chain configured for this analysis - skipping " << m_chainNames[ic] << endmsg;
    continue;
      }
 
      m_provider->msg(MSG::VERBOSE) << "Analyse chain " << m_chainNames[ic] << endmsg;
 
      // m_provider->msg(MSG::VERBOSE)  << "--------------------------------------------------" << endmsg;
      
      std::string folder_name = "";
      
      if ( name()!="" )  folder_name = name(); 
      else               folder_name = "HLT/TRIDT/IDMon";  
      
      if( m_testType != "" ) folder_name = folder_name + "/" + m_testType;
      
      std::string mongroup;
      
#if 0   
   
      if ( name().find("Shifter")!=std::string::npos || m_shifter ) {
    if      ( m_chainNames.at(ic).tail().find("_FTF") != std::string::npos )              mongroup = folder_name + "/FTF";
    else if ( m_chainNames.at(ic).tail().find("_IDTrig") != std::string::npos || 
          m_chainNames.at(ic).tail().find("_EFID") != std::string::npos )             mongroup = folder_name + "/EFID";
    else if ( m_chainNames.at(ic).tail().find("InDetTrigParticle") != std::string::npos ) mongroup = folder_name + "/EFID_RUN1";
    else if ( m_chainNames.at(ic).tail().find("_GSF")      != std::string::npos )         mongroup = folder_name + "/GSF";
    else                                                                                  mongroup = folder_name + "/Unknown";
 
    if ( m_chainNames.at(ic).vtx()!="" ) mongroup += "/" + m_chainNames.at(ic).vtx();
 
      }
#endif 
      //      else {
 
    if ( m_chainNames[ic].head() == "" ) mongroup = folder_name + "/Fullscan";
    else                                 mongroup = folder_name + "/" + m_chainNames[ic].head();
 
    std::string track_collection = ""; 
 
    if ( m_chainNames.at(ic).tail()!="" )  { 
      track_collection =  "/" + m_chainNames.at(ic).tail();
      if ( m_chainNames.at(ic).extra()!="" ) track_collection += "_" + m_chainNames.at(ic).extra();
    }
 
    if ( m_chainNames.at(ic).roi()!="" ) { 
      if ( track_collection!="" ) track_collection += "_" + m_chainNames[ic].roi();
      else                        track_collection = "/" + m_chainNames[ic].roi();
    }
 
    if ( m_chainNames.at(ic).vtx()!="" ) { 
      if ( track_collection!="" ) track_collection += "_" + m_chainNames[ic].vtx();
      else                        track_collection  = "/" + m_chainNames[ic].vtx();
    }

    if ( m_chainNames.at(ic).element()!="" ) { 
      if ( track_collection!="" ) track_collection += "_" + m_chainNames[ic].element();
      else                        track_collection  = "/" + m_chainNames[ic].element();
    }
    
    if ( track_collection!="" )  mongroup += track_collection;
 
    if ( !m_chainNames.at(ic).passed() )      mongroup += "/DTE";
 
    //      }
      
      m_provider->msg(MSG::VERBOSE) << " book mongroup " << mongroup << endmsg;
      
      m_manalysis = dynamic_cast<A*>(m_analysis);
 
      if ( monTool() ) m_manalysis->set_monTool( monTool() );
 
      m_analysis->initialise();
      
      if(m_provider->msg().level() <= MSG::VERBOSE) {
    m_provider->msg(MSG::VERBOSE) << "AnalysisConfigR3_Tier0::book() done" << endmsg;
      }
    }
 
  }
 
 
 
  virtual void finalize() {
 
    if(m_provider->msg().level() <= MSG::VERBOSE){
      m_provider->msg(MSG::VERBOSE) << "AnalysisConfigR3_Tier0::finalise() " << m_provider->name() << endmsg;
    }
    
    m_analysis->finalise();
 
    m_provider->msg(MSG::INFO) << m_provider->name() << " " << m_chainNames[0] << "   \tNRois processed: " << m_NRois << "\tRef tracks: " << m_NRefTracks << "\tTestTracks: " << m_NTestTracks << endmsg;
 
    if(m_provider->msg().level() <= MSG::VERBOSE) {
      m_provider->msg(MSG::VERBOSE) << m_provider->name() << " finalised" << endmsg;
    }
  }
 
 
protected:
 
  bool      m_useBeamCondSvc;
 
  std::vector<ChainString>  m_chainNames;
  std::vector<A*>           m_analyses;
  std::string               m_testType;
 
  bool m_doOffline;
  bool m_doMuons;
  bool m_doElectrons;
  bool m_doTaus;
  bool m_doBjets;
  bool m_doTauThreeProng;
  bool m_tauEtCutOffline;
 
  std::vector<std::string> m_offline_types;
  std::vector<std::string> m_types;
 
  std::string m_outputFileName;
 
  int m_pdgID;
  int m_parent_pdgID;

  int m_NRois;
  int m_NRefTracks;
  int m_NTestTracks;
 
  bool m_runPurity;
 
  bool m_shifter;
 
  double m_pTthreshold;
 
  bool   m_first;
  
  bool   m_containTracks;
 
  TagNProbe* m_TnP_tool ; 
 
  bool       m_tnp_flag;
 
  ToolHandle<GenericMonitoringTool>* m_monTool;
 
  TIDA::Histogram<float>*  m_invmass;
  TIDA::Histogram<float>*  m_invmass_obj;
 
};
 
 
 
#endif  // TrigInDetAnalysisExample_T_AnalysisConfigR3_Tier0_H