NTupleSvc.cxx

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/*
  Copyright (C) 2002-2017 CERN for the benefit of the ATLAS collaboration
*/
 
//          
// Distributed under the Boost Software License, Version 1.0.
//    (See accompanying file LICENSE_1_0.txt or copy at
//          http://www.boost.org/LICENSE_1_0.txt)
 
// Please feel free to contact me (krumnack@iastate.edu) for bug
// reports, feature suggestions, praise and complaints.
 
 
//
// includes
//
 
#include <EventLoopAlgs/NTupleSvc.h>
 
#include <fstream>
#include <memory>
#include <TBranchElement.h>
#include <TFile.h>
#include <TLeaf.h>
#include <TRegexp.h>
#include <TTree.h>
#include <EventLoop/Job.h>
#include <EventLoop/StatusCode.h>
#include <EventLoop/IWorker.h>
#include <EventLoopAlgs/WhiteBoardSvc.h>
#include <RootCoreUtils/Assert.h>
#include <RootCoreUtils/ThrowMsg.h>
 
//
// method implementations
//
 
ClassImp(EL::NTupleSvc)
 
namespace EL
{
  NTupleSvc *getNTupleSvc (IWorker *worker, const std::string& outputStream,
               const std::string& treeName)
  {
    RCU_REQUIRE_SOFT (worker != 0);
    RCU_REQUIRE_SOFT (!outputStream.empty());
    NTupleSvc *result = dynamic_cast<NTupleSvc*>
      (worker->getAlg ("NTupleSvc_" + outputStream + "_" + treeName));
    if (result == 0)
    {
      result = dynamic_cast<NTupleSvc*>
    (worker->getAlg ("NTupleSvc_" + outputStream));
    }
    RCU_ASSERT2_SOFT (result != 0, "output algorithm not found");
    return result;
  }
 
 
 
  void NTupleSvc ::
  testInvariant () const
  {
    RCU_INVARIANT (this != 0);
  }
 
 
 
  NTupleSvc ::
  NTupleSvc (const std::string& val_outputName)
    : m_file (0), m_tree (0), m_initialized (false),
      m_whiteboard (0)
  {
    RCU_REQUIRE_SOFT (!val_outputName.empty());
 
    m_outputName = val_outputName;
 
    RCU_NEW_INVARIANT (this);
  }
 
 
 
  NTupleSvc ::
  ~NTupleSvc ()
  {
    RCU_DESTROY_INVARIANT (this);
  }
 
 
 
  void NTupleSvc ::
  copyBranch (const std::string& name)
  {
    RCU_CHANGE_INVARIANT (this);
    m_copyBranches.insert (name);
  }
 
 
 
  void NTupleSvc ::
  copyBranchList (const std::string& fileName)
  {
    // no invariant used
 
    std::ifstream file (fileName.c_str());
    std::string line;
    while (getline (file, line))
    {
      while (!line.empty() && isspace (line[0]))
    line = line.substr (1);
      while (!line.empty() && isspace (line[line.size()-1]))
    line.pop_back();
      if (!line.empty() && line[0] != '#')
    copyBranch (line);
    }
  }
 
 
 
  void NTupleSvc ::
  addWhiteFloat (const std::string& varName)
  {
    RCU_CHANGE_INVARIANT (this);
    m_whiteFloat.insert (varName);
  }
 
 
 
  void NTupleSvc ::
  addWhiteArray (const std::string& varName)
  {
    RCU_CHANGE_INVARIANT (this);
    m_whiteArray.insert (varName);
  }
 
 
 
  TTree *NTupleSvc ::
  tree () const
  {
    RCU_READ_INVARIANT (this);
    RCU_REQUIRE2_SOFT (m_tree != 0, "initialize() has been called");
    return m_tree;
  }
 
 
 
  bool NTupleSvc ::
  getFilterPassed () const
  {
    RCU_READ_INVARIANT (this);
    return m_taken;
  }
 
 
 
  void NTupleSvc ::
  setFilterPassed (bool passed)
  {
    RCU_CHANGE_INVARIANT (this);
    if (passed)
      m_taken = true;
  }
 
 
 
  const std::string& NTupleSvc ::
  treeName () const
  {
    RCU_READ_INVARIANT (this);
    return m_treeName;
  }
 
 
 
  void NTupleSvc ::
  treeName (const std::string& val_treeName)
  {
    RCU_CHANGE_INVARIANT (this);
    m_treeName = val_treeName;
  }
 
 
 
  const char *NTupleSvc ::
  GetName () const
  {
    RCU_READ_INVARIANT (this);
    return m_outputName.c_str();
  }
 
 
 
  StatusCode NTupleSvc ::
  setupJob (Job& job)
  {
    RCU_CHANGE_INVARIANT (this);
    RCU_REQUIRE2_SOFT (job.outputHas (m_outputName), ("output stream " + m_outputName + " not configured.  try:\n  EL::OutputStream output (\"" + m_outputName + "\");\n  job.addOutput (output);").c_str());
    return EL::StatusCode::SUCCESS;
  }
 
 
 
  EL::StatusCode NTupleSvc :: changeInput (bool /*firstFile*/)
  {
    RCU_CHANGE_INVARIANT (this);
 
    m_connected = false;
    return EL::StatusCode::SUCCESS;
  }
 
 
 
  EL::StatusCode NTupleSvc :: initialize ()
  {
    RCU_CHANGE_INVARIANT (this);
 
    m_file = wk()->getOutputFile (m_outputName);
    std::string name = m_treeName;
    if (name.empty()) name = wk()->tree()->GetName();
    TDirectory *curDir = gDirectory;
    try
    {
      m_file->cd ();
      m_tree = new TTree (name.c_str(), m_tree_title.c_str());
      curDir->cd ();
    } catch (...)
    {
      curDir->cd ();
    }
 
    // Turn off auto saving:
    m_tree->SetAutoSave(10000);
    // Flush the tree contents after collecting 30 MB in memory:
    m_tree->SetAutoFlush( -30000000 );
    TTree::SetBranchStyle(1);
 
    return EL::StatusCode::SUCCESS;
  }
 
 
 
  EL::StatusCode NTupleSvc :: execute ()
  {
    RCU_CHANGE_INVARIANT (this);
 
    m_taken = false;
    return EL::StatusCode::SUCCESS;
  }
 
 
 
  EL::StatusCode NTupleSvc :: postExecute ()
  {
    RCU_CHANGE_INVARIANT (this);
 
    initBranches ();
 
    if (!m_taken)
      return EL::StatusCode::SUCCESS;
 
    copyInput ();
 
    for (whiteInfoMIter iter = m_whiteInfo.begin(),
       end = m_whiteInfo.end(); iter != end; ++ iter)
    {
      if (iter->array)
      {
    std::size_t size;
    const float *values;
    m_whiteboard->getArray (iter->name, size, values);
    std::vector<float>(values,values+size).swap (iter->buffer);
      } else
    iter->buffer[0] = m_whiteboard->getFloat (iter->name);
    }
 
    m_tree->Fill ();
    return EL::StatusCode::SUCCESS;
  }
 
 
 
  bool NTupleSvc ::
  hasName (const std::string& name) const
  {
    RCU_READ_INVARIANT (this);
    return
      name == "NTupleSvc_" + m_outputName ||
      name == "NTupleSvc_" + m_outputName + "_" + m_treeName;
  }
 
 
 
  void NTupleSvc ::
  initBranches ()
  {
    if (m_initialized == false)
    {
      m_initialized = true;
 
      std::set<std::string> branchList;
 
      findBranches (branchList);
      initOutput (branchList);
 
      for (m_whiteFloatIter iter = m_whiteFloat.begin(),
         end = m_whiteFloat.end(); iter != end; ++ iter)
      {
    WhiteInfo info;
    info.name = *iter;
    info.array = false;
    m_whiteInfo.push_back (info);
      }
      for (m_whiteArrayIter iter = m_whiteArray.begin(),
         end = m_whiteArray.end(); iter != end; ++ iter)
      {
    WhiteInfo info;
    info.name = *iter;
    info.array = true;
    m_whiteInfo.push_back (info);
      }
      for (whiteInfoMIter iter = m_whiteInfo.begin(),
         end = m_whiteInfo.end(); iter != end; ++ iter)
      {
    if (iter->array)
    {
      iter->pointer = &iter->buffer;
      m_tree->Branch (iter->name.c_str(), &iter->pointer);
    } else
    {
      iter->buffer.resize (1);
      m_tree->Branch (iter->name.c_str(), &iter->buffer[0], (iter->name + "/F").c_str());
    }
      }
      if (!m_whiteInfo.empty())
    m_whiteboard = getWhiteBoardSvc (wk());
    }
  }
 
 
  void NTupleSvc ::
  findBranches (std::set<std::string>& branchList)
  {
    for (m_copyBranchesIter iter = m_copyBranches.begin(),
       end = m_copyBranches.end(); iter != end; ++ iter)
    {
      std::size_t count = 0;
      TRegexp pattern (*iter);
      TObject *object = 0;
 
      for (TIter branchIter (wk()->tree()->GetListOfBranches());
       (object = branchIter());)
      {
    TString str (object->GetName());
    Ssiz_t len = 0;
 
    if (pattern.Index (str, &len) == 0 && len == str.Length())
    {
      branchList.insert (str.Data());
      ++ count;
    }
      }
      if (count == 0)
    RCU_THROW_MSG ("could not find any branch that matches pattern \"" + *iter + "\"");
    }
  }
 
 
 
  void NTupleSvc ::
  initOutput (const std::string& branchName)
  {
    // rationale: this ensures that I am not copying branches twice
    for (copyInfoMIter branch = m_copyInfo.begin(),
       end = m_copyInfo.end(); branch != end; ++ branch)
    {
      if (branch->name == branchName)
    return;
    }
 
    CopyInfo info;
    info.name = branchName;
    info.source = wk()->tree()->FindBranch (branchName.c_str());
    if (info.source == 0)
      RCU_THROW_MSG ("could not find input branch: " + branchName);
 
    const char *className = info.source->GetClassName();
    if (strlen (className) > 0)
    {
      info.target = m_tree->Branch (branchName.c_str(), className,
                    static_cast<void*>(0));
    } else
    {
      static std::map<std::string,std::string> types;
      if (types.empty())
      {
    types["Char_t"] = "B";
    types["UChar_t"] = "b";
    types["Short_t"] = "S";
    types["UShort_t"] = "s";
    types["Int_t"] = "I";
    types["UInt_t"] = "i";
    types["Float_t"] = "F";
    types["Double_t"] = "D";
    types["Long64_t"] = "L";
    types["ULong64_t"] = "l";
    types["Bool_t"] = "O";
      }
 
      std::string leaves;
      TObject *object;
      for (TIter iter = info.source->GetListOfLeaves(); (object = iter()); )
      {
    TLeaf *myleaf = dynamic_cast<TLeaf*>(object);
    if (myleaf == 0)
      RCU_THROW_MSG ("found non-leaf object in leaf list");
 
    std::string typeName = myleaf->GetTypeName();
    std::map<std::string,std::string>::const_iterator type
      = types.find (typeName);
    if (type == types.end())
      RCU_THROW_MSG ("unknown leaf type " + typeName);
 
    if (!leaves.empty())
      leaves += ":";
    leaves = leaves + myleaf->GetTitle() + "/" + type->second;
      }
      if (leaves.empty())
    RCU_THROW_MSG ("failed to scan leaves of branch " + branchName);
 
      for (std::string::size_type pos = 0;
       (pos = leaves.find ("[", pos)) != std::string::npos; )
      {
    ++ pos;
    std::string::size_type pos2 = leaves.find ("]", pos);
    if (pos2 == std::string::npos)
      RCU_THROW_MSG ("failed to scan leaf dimensions for " + leaves);
    std::string dim = leaves.substr (pos, pos2 - pos);
    if (!(dim[0] >= '0' && dim[0] <= '9'))
      initOutput (dim);
      }
      info.target = m_tree->Branch (branchName.c_str(), static_cast<void*>(0),
                    leaves.c_str());
    }
    m_copyInfo.push_back (info);
  }
 
 
 
  void NTupleSvc ::
  initOutput (const std::set<std::string>& branchList)
  {
    for (std::set<std::string>::const_iterator branch = branchList.begin(),
       end = branchList.end(); branch != end; ++ branch)
      initOutput (*branch);
  }
 
 
 
  void NTupleSvc ::
  copyInput ()
  {
    if (!m_connected)
    {
      for (copyInfoMIter info = m_copyInfo.begin(),
         end = m_copyInfo.end(); info != end; ++ info)
      {
    info->source = dynamic_cast<TBranch*>
      (wk()->tree()->GetBranch (info->name.c_str()));
    RCU_ASSERT2_SOFT (info->source != 0, ("source branch " + info->name + " not found for copying").c_str());
      }
      m_connected = true;
    }
 
    for (copyInfoMIter info = m_copyInfo.begin(),
       end = m_copyInfo.end(); info != end; ++ info)
    {
      void *address = info->source->GetAddress();
      if (address == 0)
      {
    std::size_t size = sizeof (void*);
    TObject *object;
    for (TIter iter = info->source->GetListOfLeaves();
         (object = iter());)
    {
      TLeaf *myleaf = dynamic_cast<TLeaf*>(object);
      RCU_ASSERT (myleaf != 0);
      Int_t countval;
      TLeaf *countleaf = myleaf->GetLeafCounter (countval);
      if (countleaf)
        countval = countleaf->GetMaximum();
      if (countval < 0)
        RCU_THROW_MSG (std::string ("could not determine size of leaf ") + myleaf->GetName() + " in branch " + info->name);
      if (countval == 0)
        countval = 1;
      const std::size_t mysize
        = myleaf->GetOffset() + myleaf->GetLenType() * countval;
      if (size < mysize)
        size = mysize;
    }
    info->buffer.resize (size, 0);
    info->source->SetStatus (1);
    info->source->SetAddress (address = &info->buffer[0]);
      }
      RCU_ASSERT (address != 0);
      info->target->SetAddress (address);
      info->source->GetEntry (wk()->treeEntry(), 1);
    }
  }
}