GenericMonitoringTool Namespace Reference

Functions
def	_invalidName (flags, name)
	Check if name is an allowed histogram/branch name. More...
def	_alias (varname)
	Generate an alias for a set of variables. More...
def	_validateOptions (user, default)
	Validate user inputs for "opt" argument of defineHistogram. More...
def	_options (opt)
	Generate dictionary entries for opt strings. More...
def	defineHistogram (flags, varname, type='TH1F', path=None, title=None, weight=None, xbins=100, xmin=0, xmax=1, xlabels=None, ybins=None, ymin=None, ymax=None, ylabels=None, zmin=None, zmax=None, zlabels=None, opt=None, convention=None, cutmask=None, treedef=None, merge=None)
	Generate histogram definition string for the GenericMonitoringTool.Histograms property. More...
def	defineTree (flags, varname, treedef, path=None, title=None, opt='', convention=None, cutmask=None)
	Generate tree definition string for the GenericMonitoringTool.Histograms property. More...

Function Documentation

_alias()

def GenericMonitoringTool._alias (   varname )

private

Generate an alias for a set of variables.

A helper function is useful for this operation, since it is used both by the module function defineHistogram, as well as by the GenericMonitoringArray defineHistogram member function.

Parameters

varname

unparsed

Returns

varList, alias

Definition at line 199 of file GenericMonitoringTool.py.

def _alias(varname):
    variableAliasSplit = varname.split(';')
    varList = [v.strip() for v in variableAliasSplit[0].split(',')]
    if len(variableAliasSplit)==1:
        return varList, '_vs_'.join(reversed(varList))
    elif len(variableAliasSplit)==2:
        return varList, variableAliasSplit[1]
    else:
        message = 'Invalid variable or alias for {}. Histogram(s) not defined.'
        log.warning(message.format(varname))
        return None, None
 
 

_invalidName()

def GenericMonitoringTool._invalidName (   flags,   name  )

private

Check if name is an allowed histogram/branch name.

Certain characers are best avoided in ROOT histogram names as it makes interactive use awkward. Also there are additional constraints from OH and MDA archiving for online running (ATR-15173).

Parameters

flags	configuration flags
name	string to check

Returns

set of forbidden characters found

Definition at line 185 of file GenericMonitoringTool.py.

def _invalidName(flags, name):
    blacklist = '/\\'
    if flags.Common.isOnline:
        blacklist += '=,:.()'
    return set(name).intersection(blacklist)
 
 

_options()

def GenericMonitoringTool._options (   opt )

private

Generate dictionary entries for opt strings.

Parameters

opt	string or dictionary specifying type

Returns

dictionary full of options

Definition at line 238 of file GenericMonitoringTool.py.

def _options(opt):
    # Set the default dictionary of options
    settings = {
        'Sumw2': False,                 # store sum of squares of weights
        'kLBNHistoryDepth': 0,          # length of lumiblock history
        'kAddBinsDynamically': False,   # add new bins if fill is outside axis range
        'kRebinAxes': False,            # increase axis range without adding new bins
        'kCanRebin': False,             # allow all axes to be rebinned
        'kVec': False,                  # add content to each bin from each element of a vector
        'kVecUO': False,                # same as above, but use 0th(last) element for underflow(overflow)
        'kCumulative': False,           # fill bin of monitored object's value, and every bin below it
        'kLive': 0,                     # plot only the last N lumiblocks on y_vs_LB plots
        'kAlwaysCreate': False          # create the histogram, even if it is empty
    }
    if opt is None:
        # If no options are provided, skip any further checks.
        pass
    elif isinstance(opt, dict):
        # If the user provides a partial dictionary, update the default with user's.
        _validateOptions(opt, settings) # check validity of user's options
        settings.update(opt) # update the default dictionary
    elif isinstance(opt, str) and len(opt)>0:
        # If the user provides a comma- or space-separated string of options.
        settings = _options (opt.replace(',',' ').split())
 
    elif isinstance(opt,str):
        # empty string case 
        pass
    elif isinstance(opt, list):
        # process each item in list
        unknown = []
        for o in opt:
            kv = o.split('=', maxsplit=1)
            key = kv[0]
            if len(kv)==2:
                value = False if kv[1]=='False' else int(kv[1])  # only bool and int supported
            else:
                value = True
            if key in settings:
                assert(type(settings[key])==type(value))  # ensure same type as in defaults
                settings[key] = value
            else:
                unknown.append(key)
 
        assert len(unknown)==0, f'Unknown option(s) provided: {", ".join(unknown)}.'
    else:
        raise ValueError("Unknown opt type")
    return settings
 
 

_validateOptions()

def GenericMonitoringTool._validateOptions (   user,   default  )

private

Validate user inputs for "opt" argument of defineHistogram.

Check that the user-provided option for a specific "opt" argument exists in the default dictionary, and that it has the expected type.

Parameters

user	the option dictionary provided by the user
default	the default dictionary of options

Definition at line 218 of file GenericMonitoringTool.py.

def _validateOptions(user, default):
    for key, userVal in user.items():
        # (1) Check that the requested key exists
        assert key in default,\
            f'Unknown option {key} provided. Choices are [{", ".join(default)}].'
        # (2) Check that the provided type is correct
        userType = type(userVal)
        defaultVal = default[key]
        defaultType = type(defaultVal)
        if isinstance(userVal, bool) or isinstance(defaultVal, bool):
            assert isinstance(userVal, bool) and isinstance(defaultVal, bool),\
                f'{key} provided {userType}, expected bool.'
        else:
            assert isinstance(defaultVal, userType),\
                f'{key} provided {userType}, expected {defaultType}'
 
 

defineHistogram()

def GenericMonitoringTool.defineHistogram	(		flags,
			varname,
			type = 'TH1F',
			path = None,
			title = None,
			weight = None,
			xbins = 100,
			xmin = 0,
			xmax = 1,
			xlabels = None,
			ybins = None,
			ymin = None,
			ymax = None,
			ylabels = None,
			zmin = None,
			zmax = None,
			zlabels = None,
			opt = None,
			convention = None,
			cutmask = None,
			treedef = None,
			merge = None
	)

Generate histogram definition string for the GenericMonitoringTool.Histograms property.

For full details see the GenericMonitoringTool documentation.

Parameters

flags	configuration flags object
varname	one (1D) or two (2D) variable names separated by comma optionally give histogram name by appending ";" plus the name
type	histogram type
path	top-level histogram directory (e.g. EXPERT, SHIFT, etc.)
title	Histogram title and optional axis title (same syntax as in TH constructor)
weight	Name of the variable containing the fill weight
cutmask	Name of the boolean-castable variable that determines if the plot is filled
opt	String or dictionary of histogram options (see _options())
treedef	Internal use only. Use defineTree() method.
xlabels	List of x bin labels.
ylabels	List of y bin labels.
zlabels	List of x bin labels.
merge	Merge method to use for object, if not default. Possible algorithms for offline DQM are given in https://twiki.cern.ch/twiki/bin/view/Atlas/DQMergeAlgs

Definition at line 306 of file GenericMonitoringTool.py.

def defineHistogram(flags, varname, type='TH1F', path=None,
                    title=None, weight=None,
                    xbins=100, xmin=0, xmax=1, xlabels=None,
                    ybins=None, ymin=None, ymax=None, ylabels=None,
                    zmin=None, zmax=None, zlabels=None,
                    opt=None, convention=None, cutmask=None,
                    treedef=None, merge=None):
 
    # All of these fields default to an empty string
    stringSettingsKeys = ['xvar', 'yvar', 'zvar', 'type', 'path', 'title', 'weight',
                          'cutMask', 'convention', 'alias', 'treeDef', 'merge']
    # All of these fileds default to 0
    numberSettingsKeys = ['xbins', 'xmin', 'xmax', 'ybins', 'ymin', 'ymax', 'zbins',
                          'zmin', 'zmax']
    # All of these fields default to an empty array
    arraySettingsKeys = ['allvars', 'xlabels', 'xarray', 'ylabels', 'yarray', 'zlabels']
    # Initialize a dictionary with all possible fields
    settings = dict((key, '') for key in stringSettingsKeys)
    settings.update(dict((key, 0.0) for key in numberSettingsKeys))
    settings.update(dict((key, []) for key in arraySettingsKeys))
 
    # Alias
    varList, alias = _alias(varname)
    if alias is None or alias.strip() == '':
        log.warning(f'Unable to define histogram using definition "{varname}" since we cannot determine its name.')
        return ''
 
    invalid = _invalidName(flags, alias)
    if invalid:
        log.warning('%s is not a valid histogram name. Illegal characters: %s',
                    alias, ' '.join(invalid))
        return ''
 
    settings['alias'] = alias
 
    # Variable names
    if len(varList)>0:
        settings['xvar'] = varList[0]
    if len(varList)>1:
        settings['yvar'] = varList[1]
    if len(varList)>2:
        settings['zvar'] = varList[2]
    settings['allvars'] = varList
    nVars = len(varList)
 
    # Type
    if flags.Common.isOnline and type in ['TTree']:
        log.warning('Object %s of type %s is not supported for online running and '
                    'will not be added.', varname, type)
        return ''
    # Check that the histogram's dimension matches the number of monitored variables
    # Add TTree to the lists, it can have any number of vars
    hist2D = ['TH2','TProfile','TEfficiency', 'TTree']
    hist3D = ['TProfile2D','TEfficiency', 'TTree']
    if nVars==2:
        assert any([valid2D in type for valid2D in hist2D]),'Attempting to use two '
        'monitored variables with a non-2D histogram.'
    elif nVars==3:
        assert any([valid3D in type for valid3D in hist3D]),'Attempting to use three '
        'monitored variables with a non-3D histogram.'
    settings['type'] = type
 
    # Path
    if path is None:
        path = ''
    settings['path'] = path
 
    # Title
    if title is None:
        title = varname
    settings['title'] = title
 
    # Weight
    if weight is not None:
        settings['weight'] = weight
 
    # Cutmask
    if cutmask is not None:
        settings['cutMask'] = cutmask
 
    # Output path naming convention
    if convention is not None:
        settings['convention'] = convention
 
    # Bin counts and ranges
    # Possible types allowed for bin counts
    binTypes = (int, list, tuple)
 
    # X axis count and range
    assert isinstance(xbins, binTypes),'xbins argument must be int, list, or tuple'
    if isinstance(xbins, int): # equal x bin widths
        settings['xbins'], settings['xarray'] = xbins, []
    else: # x bin edges are set explicitly
        settings['xbins'], settings['xarray'] = len(xbins)-1, xbins
    settings['xmin'] = xmin
    settings['xmax'] = xmax
 
    # Y axis count and range
    if ybins is not None:
        assert isinstance(ybins, binTypes),'ybins argument must be int, list, or tuple'
        if isinstance(ybins, int): # equal y bin widths
            settings['ybins'], settings['yarray'] = ybins, []
        else: # y bin edges are set explicitly
            settings['ybins'], settings['yarray'] = len(ybins)-1, ybins
    if ymin is not None:
        settings['ymin'] = ymin
    if ymax is not None:
        settings['ymax'] = ymax
 
    # Z axis count and range
    if zmin is not None:
        settings['zmin'] = zmin
    if zmax is not None:
        settings['zmax'] = zmax
 
    # Then, parse the [xyz]label arguments
    if xlabels is not None and len(xlabels)>0:
        assert isinstance(xlabels, (list, tuple)),'xlabels must be list or tuple'
        settings['xbins'] = len(xlabels)
        settings['xlabels'] = xlabels
    if ylabels is not None and len(ylabels)>0:
        assert isinstance(ylabels, (list, tuple)),'ylabels must be list or tuple'
        settings['ybins'] = len(ylabels)
        settings['ylabels'] = ylabels
        # if user did not specify ymin and ymax, set it here, as cannot have ymin=ymax=0
        if ymin is None: settings["ymin"] = 0
        if ymax is None: settings["ymax"] = settings["ymin"]+1
    if zlabels is not None and len(zlabels)>0:
        assert isinstance(zlabels, (list, tuple)),'zlabels must be list or tuple'
        settings['zlabels'] = zlabels
 
    # Tree branches
    if treedef is not None:
        assert type=='TTree','cannot define tree branches for a non-TTree object'
        settings['treeDef'] = treedef
 
    # Add all other options
    settings.update(_options(opt))
 
    # some things need merging
    if ((settings['kAddBinsDynamically'] or settings['kRebinAxes'] or settings['kCanRebin'])
        and (not flags.Common.isOnline and 'OFFLINE' in settings['convention'])):
        if merge is None:
            log.warning(f'Merge method for {alias} is not specified but needs to be "merge" due to histogram definition; overriding for your convenience')
            merge = 'merge'
 
    # merge method
    if merge is not None:
        assert type not in ['TEfficiency', 'TTree', 'TGraph'],'only default merge defined for non-histogram objects'
        settings['merge'] = merge
 
    # LB histograms always need to be published online (ADHI-4947)
    if settings['kLBNHistoryDepth']>0 and flags.Common.isOnline:
        settings['kAlwaysCreate'] = True
        log.debug('Setting kAlwaysCreate for lumiblock histogram "%s"', varname)
 
    # Check that kLBNHistoryDepth and kLive are both non-negative
    assert settings['kLBNHistoryDepth']>=0, f'Histogram "{alias}" has invalid kLBNHistoryDepth.'
    assert settings['kLive']>=0, f'Histogram "{alias}" has invalid kLive.'
    # kLBNHistoryDepth and kLive options are mutually exclusive. User may not specify both.
    assert settings['kLBNHistoryDepth']==0 or settings['kLive']==0,\
    f'Cannot use both kLBNHistoryDepth and kLive for histogram {alias}.'
    # kLive histograms are only available for Online monitoring.
    assert settings['kLive']==0 or flags.Common.isOnline,\
    f'Cannot use kLive with offline histogram {alias}.'
 
    return json.dumps(settings)
 
 

defineTree()

def GenericMonitoringTool.defineTree	(		flags,
			varname,
			treedef,
			path = None,
			title = None,
			opt = '',
			convention = None,
			cutmask = None
	)

Generate tree definition string for the GenericMonitoringTool.Histograms property.

Convenience tool for

For full details see the GenericMonitoringTool documentation.

Parameters

flags	configuration flags object
varname	at least one variable name (more than one should be separated by comma); optionally give the name of the tree by appending ";" plus the tree name
treedef	TTree branch definition string. Looks like the standard TTree definition (see https://root.cern.ch/doc/master/classTTree.html#addcolumnoffundamentaltypes). In fact if only scalars are given, it is exactly the same as you would use to define the TTree directly: "varA/F:varB/I:...". Vectors can be defined by giving "vector<int>", etc., instead of "I".
path	top-level histogram directory (e.g. EXPERT, SHIFT, etc.)
title	Histogram title and optional axis title (same syntax as in TH constructor)
cutmask	Name of the boolean-castable variable that determines if the plot is filled
opt	TTree options (none currently)
convention	Expert option for how the objects are placed in ROOT

Definition at line 491 of file GenericMonitoringTool.py.

def defineTree(flags, varname, treedef, path=None, title=None,
               opt='', convention=None,
               cutmask=None):
    return defineHistogram(flags, varname, type='TTree', path=path, title=title,
                           treedef=treedef, opt=opt, convention=convention,
                           cutmask=cutmask)