InDetTrackHoleSearchTool.cxx

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/*
  Copyright (C) 2002-2025 CERN for the benefit of the ATLAS collaboration
*/

// InDetTrackHoleSearchTool.cxx, (c) ATLAS Detector software
 
#include "InDetTrackHoleSearch/InDetTrackHoleSearchTool.h"
 
//Trk
#include "TrkTrack/Track.h"
#include "TrkTrack/TrackStateOnSurface.h"
#include "TrkParameters/TrackParameters.h"
#include "TrkEventPrimitives/ParamDefs.h"
#include "TrkTrackSummary/TrackSummary.h"
#include "TrkMeasurementBase/MeasurementBase.h"
#include "TrkEventUtils/TrackStateOnSurfaceComparisonFunction.h"
#include "TrkGeometry/TrackingGeometry.h"
#include "TrkGeometry/TrackingVolume.h"
#include "Identifier/Identifier.h"
#include "AtlasDetDescr/AtlasDetectorID.h"
#include "InDetReadoutGeometry/SiDetectorElement.h"
#include "InDetRecToolInterfaces/IInDetTestPixelLayerTool.h"
#include "TrkVolumes/Volume.h"
#include "TrkVolumes/CylinderVolumeBounds.h"
#include "GeoModelInterfaces/IGeoModelSvc.h"
 
#include <memory>
#include <set>
 
//================ Constructor =================================================
InDet::InDetTrackHoleSearchTool::InDetTrackHoleSearchTool(const std::string& t,
                                                          const std::string& n,
                                                          const IInterface*  p) :
  AthAlgTool(t,n,p),
  m_atlasId(nullptr),
  m_warning(0) {
  declareInterface<ITrackHoleSearchTool>(this);
}
 
//================ Destructor =================================================
InDet::InDetTrackHoleSearchTool::~InDetTrackHoleSearchTool() = default;
 
//================ Initialisation =================================================
StatusCode InDet::InDetTrackHoleSearchTool::initialize() {
 
  StatusCode sc = AlgTool::initialize();
  if (sc.isFailure()) return sc;
 
  ATH_CHECK(detStore()->retrieve(m_atlasId, "AtlasID"));
 
  ATH_CHECK(m_extrapolator.retrieve());
 
  if (m_extendedListOfHoles) ATH_MSG_INFO("Search for extended list of holes ");
 
  return StatusCode::SUCCESS;
}
 
//================ Finalisation =================================================
StatusCode InDet::InDetTrackHoleSearchTool::finalize() {
  StatusCode sc = AlgTool::finalize();
  return sc;
}
 
//============================================================================================
void InDet::InDetTrackHoleSearchTool::countHoles(const Trk::Track& track,
                                                 std::vector<int>& information,
                                                 const Trk::ParticleHypothesis partHyp) const {
  std::vector<const Trk::TrackStateOnSurface*>* listOfHoles = nullptr;
  searchForHoles(track,&information,listOfHoles,partHyp);
  if (listOfHoles) {
    ATH_MSG_ERROR("listOfHoles is leaking in countHoles !!!");
    for (const auto *listOfHole : *listOfHoles) {
      delete listOfHole;
    }
    delete listOfHoles;
    listOfHoles = nullptr;
  }
  }
 
//============================================================================================
const Trk::TrackStates* InDet::InDetTrackHoleSearchTool::getHolesOnTrack(const Trk::Track& track,
                                                                                                   const Trk::ParticleHypothesis partHyp) const {
  std::vector<const Trk::TrackStateOnSurface*>* listOfHoles = new std::vector<const Trk::TrackStateOnSurface*>;
  searchForHoles(track, nullptr, listOfHoles,partHyp);
 
  Trk::TrackStates* output = new Trk::TrackStates;
  for (const auto *listOfHole : *listOfHoles)
    output->push_back(listOfHole);
 
  delete listOfHoles;
  listOfHoles = nullptr;
  return output;
}
 
//============================================================================================
const Trk::Track*  InDet::InDetTrackHoleSearchTool::getTrackWithHoles(const Trk::Track& track,
                                                                      const Trk::ParticleHypothesis partHyp) const {
  std::vector<const Trk::TrackStateOnSurface*>* listOfHoles = new std::vector<const Trk::TrackStateOnSurface*>;
  searchForHoles(track, nullptr, listOfHoles,partHyp);
  const  Trk::Track* newTrack = addHolesToTrack(track,listOfHoles);
  delete listOfHoles;
  listOfHoles = nullptr;
  return newTrack;
}
 
//============================================================================================
const Trk::Track* InDet::InDetTrackHoleSearchTool::getTrackWithHolesAndOutliers(const Trk::Track& track,
                                                                                const Trk::ParticleHypothesis partHyp) const {
  return getTrackWithHoles(track,partHyp);
}
 
 
//============================================================================================
 
void InDet::InDetTrackHoleSearchTool::searchForHoles(const Trk::Track& track,
                                                     std::vector<int>* information,
                                                     std::vector<const Trk::TrackStateOnSurface*>* listOfHoles,
                                                     const Trk::ParticleHypothesis partHyp) const {
  ATH_MSG_DEBUG("starting searchForHoles()");
 
  if (information) {
    (*information)[Trk::numberOfPixelHoles]        = -1;
    (*information)[Trk::numberOfSCTHoles]          = -1;
    (*information)[Trk::numberOfSCTDoubleHoles]    = -1;
    (*information)[Trk::numberOfPixelDeadSensors]  = -1;
    (*information)[Trk::numberOfSCTDeadSensors]    = -1;
    (*information)[Trk::numberOfTRTHoles]          = -1;
    (*information)[Trk::numberOfTRTDeadStraws]     = -1;
 
  }
 
  std::map<const Identifier, const Trk::TrackStateOnSurface*> mapOfHits;
 
  // JEF: fix of [bug #44382] Poor Tracking Software Performance without SCT
  // the mapOfPrediction needs the knowledge weather a holesearch should be carried out
  // on this identifier or just the search for dead modules
  // therefore: if the boolean is set to true, a holesearch will be caarried out, otherwise just
  // the search for dead modules
  // for identifiers BEFORE the last measurement (and after the first): holesearch will be carried out always
  // for identifiers AFTER the last measurement (or before the first), we have to distiguish two different scenarios:
  // 1) extendedListOfHoles==True: a hole search will be carried out for all identifiers
  // 2) extendedListOfHoles==False (default for collisions): dead modules will be counted after the last
  //    measurement, but no holes
  std::map<const Identifier, std::pair<const Trk::TrackParameters*,const bool> >     mapOfPredictions;
 
  bool listOk = getMapOfHits(
    Gaudi::Hive::currentContext(), track, partHyp, mapOfHits, mapOfPredictions);
 
  if (listOk) {
    ATH_MSG_DEBUG("Perform stepwise hole search");
    performHoleSearchStepWise(mapOfHits, mapOfPredictions, information, listOfHoles);
  } else {
    ATH_MSG_DEBUG("List of hits not properly obtained, abort hole search.");
  }
 
  for (auto & mapOfPrediction : mapOfPredictions) {
    delete (mapOfPrediction.second).first;
    (mapOfPrediction.second).first = nullptr;
  }
 
  }
 
// ====================================================================================================================
bool InDet::InDetTrackHoleSearchTool::getMapOfHits(const EventContext& ctx,
                                                   const Trk::Track& track,
                                                   const Trk::ParticleHypothesis partHyp,
                                                   std::map<const Identifier, const Trk::TrackStateOnSurface*>& mapOfHits,
                                                   std::map<const Identifier, std::pair<const Trk::TrackParameters*,const bool> >& mapOfPredictions) const {
 
  /* find all Si TSOS
     - all of the above have to have identifiers
     - keep outliers and holes
     - mark tracks with TRT
     - sort into map by identifier
  */
  //std::cout << "track: " << track << std::endl;
  int imeas = 0;
  const Trk::TrackParameters* firstsipar = nullptr;
 
  for (const auto *iterTSOS : *track.trackStateOnSurfaces()) {
    // type of state is measurement, hole or outlier ?
    if (iterTSOS->type(Trk::TrackStateOnSurface::Measurement) ||
        iterTSOS->type(Trk::TrackStateOnSurface::Outlier)) {
      Identifier id ;
      bool hasID = false;
      if (iterTSOS->measurementOnTrack() != nullptr
          && iterTSOS->measurementOnTrack()->associatedSurface().associatedDetectorElement() != nullptr
          && iterTSOS->measurementOnTrack()->associatedSurface().associatedDetectorElement()->identify() != 0) {
        id    = iterTSOS->measurementOnTrack()->associatedSurface().associatedDetectorElement()->identify();
        hasID = true;
      } else if (iterTSOS->trackParameters() != nullptr
                 && iterTSOS->trackParameters()->associatedSurface().associatedDetectorElement() != nullptr
                 && iterTSOS->trackParameters()->associatedSurface().associatedDetectorElement()->identify() != 0) {
        id    = iterTSOS->trackParameters()->associatedSurface().associatedDetectorElement()->identify();
        hasID = true;
      }
      // copy all Si track states, including the holes and outliers
      if (hasID && (m_atlasId->is_pixel(id) || m_atlasId->is_sct(id))) {
        // sort the state according to the id
        mapOfHits.insert(std::pair<const Identifier, const Trk::TrackStateOnSurface*>(id,iterTSOS));
        if (!iterTSOS->type(Trk::TrackStateOnSurface::Outlier)) {
          ++imeas;
          if (!iterTSOS->trackParameters() && m_warning<10) {
            m_warning++;
            ATH_MSG_WARNING("No track parameters available for state of type measurement");
            ATH_MSG_WARNING("Don't run this tool on slimmed tracks!");
            if (m_warning==10) ATH_MSG_WARNING("(last message!)");
          }
        }
        // for cosmics: remember parameters of first SI TSOS
        if (m_cosmic && !firstsipar && iterTSOS->trackParameters()) firstsipar=iterTSOS->trackParameters();
        if (iterTSOS->trackParameters()) {
          ATH_MSG_VERBOSE("TSOS pos: " << iterTSOS->trackParameters()->position()
                          << "   r: " << sqrt(pow(iterTSOS->trackParameters()->position().x(),2)
                                              +pow(iterTSOS->trackParameters()->position().y(),2))
                          << "     Si measurement");
        }
      } else {
        if (iterTSOS->trackParameters()) {
          ATH_MSG_VERBOSE("TSOS pos: " << iterTSOS->trackParameters()->position()
                          << "   r: " << sqrt(pow(iterTSOS->trackParameters()->position().x(),2)
                                              +pow(iterTSOS->trackParameters()->position().y(),2))
                          << "     TRT measurement");
        }
      }
    }
  }
 
  ATH_MSG_DEBUG("Number of Si hits + outliers on original track: " << mapOfHits.size() << " , hits only: " << imeas);
  if ((imeas<m_minSiHits && ! m_extendedListOfHoles) || imeas==0 || (!firstsipar && m_cosmic)) {
    ATH_MSG_DEBUG("Less than "<< m_minSiHits << " Si measurements " << "on track, abort ID hole search");
    mapOfHits.clear();
    return false;
  }
 
  // find starting point for 2nd iteration to find predictions
  std::unique_ptr<const Trk::TrackParameters> startParameters;
 
  // ------- special logic for cosmics to obtain start point for hole search
 
  if (m_cosmic) {
    // retrieve surface, from which hole search should start
    // retrieve tracking geometry
    const Trk::TrackingGeometry* trackingGeometry =  m_extrapolator->trackingGeometry();
    // get sct volume
    const Trk::TrackingVolume* sctVolume = trackingGeometry->trackingVolume("InDet::Detectors::SCT::Barrel");
    //get BoundarySurface for cylinder between sct and trt
    const Trk::CylinderSurface* sctCylinder = nullptr;
    const Trk::Surface* sctSurface= &(sctVolume->boundarySurfaces()[Trk::tubeOuterCover]->surfaceRepresentation());
    if(sctSurface->type()==Trk::SurfaceType::Cylinder){
      sctCylinder= static_cast<const Trk::CylinderSurface*> (sctSurface);
    }
    if (!sctCylinder) {
      ATH_MSG_ERROR ("cast to CylinderSurface failed, should never happen !");
      return false;
    }
    // extrapolate track to cylinder; take this as starting point for hole search
 
    if (firstsipar) {
      //std::cout << "firstsipar: " << *firstsipar << " pos: " << firstsipar->position() << std::endl;
      startParameters = m_extrapolator->extrapolate(
        ctx, *firstsipar, *sctCylinder, Trk::oppositeMomentum, true, partHyp);
    }
 
    // if track can't be extrapolated to this cylinder (EC track!), extrapolate to disc outside TRT/SCT EC
    if (!startParameters) {
      ATH_MSG_DEBUG("no start parameters on SCT cylinder, try TRT ec disc");
      // get BoundarySurface for disk which encloses TRT ECs
      // depending on track origin use neg or pos EC
      const Trk::DiscSurface* trtDisc=nullptr;
      // inverse logic: tracks with theta < M_PI/2 have origin in negative EC
      if (firstsipar->parameters()[Trk::theta] < M_PI/2.) {
        const Trk::TrackingVolume* trtVolume = trackingGeometry->trackingVolume("InDet::Detectors::TRT::NegativeEndcap");
        const Trk::Surface* trtSurface = &(trtVolume->boundarySurfaces()[Trk::negativeFaceXY]->surfaceRepresentation());
        if(trtSurface->type()==Trk::SurfaceType::Disc){
          trtDisc = static_cast<const Trk::DiscSurface*> (trtSurface);
        }
      } else {
        const Trk::TrackingVolume* trtVolume = trackingGeometry->trackingVolume("InDet::Detectors::TRT::PositiveEndcap");
        const Trk::Surface* trtSurface = &(trtVolume->boundarySurfaces()[Trk::positiveFaceXY]->surfaceRepresentation());
        if(trtSurface->type()==Trk::SurfaceType::Disc){
          trtDisc = static_cast<const Trk::DiscSurface*> (trtSurface);
        }
      }
 
      if (trtDisc) {
        // extrapolate track to disk
        startParameters = m_extrapolator->extrapolate(
          ctx, *firstsipar, *trtDisc, Trk::oppositeMomentum, true, partHyp);
      }
    }
  } else {  // no cosmics
 
    if (track.perigeeParameters()) {
       startParameters.reset( track.perigeeParameters()->clone());
    } else if (track.trackParameters()->front()) {
      ATH_MSG_DEBUG("No perigee, extrapolate to 0,0,0");
      // go back to perigee
      startParameters =
        m_extrapolator->extrapolate(ctx,
                                    *(track.trackParameters()->front()),
                                    Trk::PerigeeSurface(),
                                    Trk::anyDirection,
                                    false,
                                    partHyp);
    }
  }
 
  if (!startParameters) {
    ATH_MSG_DEBUG("No start point obtained, hole search not performed.");
    mapOfHits.clear();
    return false;
  }
 
  bool foundFirst = false;
  // ME - if we look for an extended list of holes, we take the first module, otherwise we searchfor the first measurment
  // if we have a cosmics track, we want to get the extended list as well!
  if (m_extendedListOfHoles ||  m_cosmic) {
    ATH_MSG_DEBUG("We are looking for an extended list of holes, so add eventual holes before first hits");
    foundFirst = true;
  }
 
  Identifier          id(0);
  const Trk::Surface* surf  = nullptr;
  bool                hasID = false;
 
  // 2nd iteration to find predictions
  Trk::TrackStates::const_iterator iterTSOS = track.trackStateOnSurfaces()->begin();
 
  // for cosmics: go to the first si mearsurement on track
  // for cosmics: add perigee as intermediate state, as the extrapolator does nothing if the starting layer and destination layer are the same
  if (m_cosmic) {
    while (iterTSOS!=track.trackStateOnSurfaces()->end()
           && (!(*iterTSOS)->type(Trk::TrackStateOnSurface::Measurement)
               || (*iterTSOS)->measurementOnTrack()->associatedSurface().type()!=Trk::SurfaceType::Plane)) {
      ++iterTSOS;
    }
  }
 
  ATH_MSG_VERBOSE("start position: " << startParameters->position()
                  << "   r: " << sqrt(pow(startParameters->position().x(),2)
                                      +pow(startParameters->position().y(),2)));
 
  int measno=0;
  int nmeas=(int)track.measurementsOnTrack()->size();
  for (; iterTSOS!=track.trackStateOnSurfaces()->end();++iterTSOS) {
    const Trk::Perigee *per=nullptr;
    // type of state is measurement ?
    if ((*iterTSOS)->type(Trk::TrackStateOnSurface::Measurement) ||
        (*iterTSOS)->type(Trk::TrackStateOnSurface::Outlier) ||
        ((*iterTSOS)->type(Trk::TrackStateOnSurface::Perigee) && m_cosmic)) {
      hasID=false;
      per=nullptr;
      const Trk::TrackParameters* tmpParam= (*iterTSOS)->trackParameters();
      if (m_cosmic && tmpParam) {
        if(tmpParam->associatedSurface().type()==Trk::SurfaceType::Perigee){
          per=static_cast<const Trk::Perigee*>(tmpParam) ;
        }
      }
      if ((*iterTSOS)->measurementOnTrack() != nullptr
          && (*iterTSOS)->measurementOnTrack()->associatedSurface().associatedDetectorElement() != nullptr
          && (*iterTSOS)->measurementOnTrack()->associatedSurface().associatedDetectorElement()->identify() != 0) {
        id    = (*iterTSOS)->measurementOnTrack()->associatedSurface().associatedDetectorElement()->identify();
        surf  = &(*iterTSOS)->measurementOnTrack()->associatedSurface();
        hasID = true;
      } else if ((*iterTSOS)->trackParameters() != nullptr
                 && (*iterTSOS)->trackParameters()->associatedSurface().associatedDetectorElement() != nullptr
                 && (*iterTSOS)->trackParameters()->associatedSurface().associatedDetectorElement()->identify() != 0) {
        id    = (*iterTSOS)->trackParameters()->associatedSurface().associatedDetectorElement()->identify();
        surf  = &((*iterTSOS)->trackParameters()->associatedSurface());
        hasID = true;
      } else if (m_cosmic && per) {
        surf=&((*iterTSOS)->trackParameters()->associatedSurface());
      }
 
      // see if this is an Si state !
      if ((m_cosmic && per) || (hasID && (m_atlasId->is_pixel(id) || m_atlasId->is_sct(id) || m_atlasId->is_trt(id)))) {
 
        if (m_atlasId->is_trt(id)) ATH_MSG_VERBOSE("Target is TRT, see if we can add something");
 
        // extrapolate stepwise to this parameter (be careful, sorting might be wrong)
 
        if(std::abs(startParameters->position().z())>5000.){
          ATH_MSG_DEBUG("Pathological track parameter well outside of tracking detector");
          ATH_MSG_DEBUG("Propagator might have issue with this, discarding");
          ATH_MSG_VERBOSE("dumping track parameters " << *startParameters);
          continue;
        }
 
        std::vector<std::unique_ptr<Trk::TrackParameters> > paramList =
          m_extrapolator->extrapolateStepwise(ctx,
                                              *startParameters,
                                              *surf,
                                              Trk::alongMomentum,
                                              false, partHyp);
 
        if (paramList.empty()) {
          ATH_MSG_VERBOSE("--> Did not manage to extrapolate to surface!!!");
          continue;
        }
 
        ATH_MSG_VERBOSE("Number of parameters in this step: " << paramList.size());
 
        // loop over the predictons and analyze them
        for (std::unique_ptr<Trk::TrackParameters>& thisParameters : paramList) {
          ATH_MSG_VERBOSE("extrapolated pos: " << thisParameters->position() << "   r: " <<
                          sqrt(pow(thisParameters->position().x(),2)+pow(thisParameters->position().y(),2)));
 
          // check if surface has identifer !
          Identifier id2;
          if ((thisParameters->associatedSurface()).associatedDetectorElement() != nullptr &&
              (thisParameters->associatedSurface()).associatedDetectorElement()->identify() != 0) {
            id2 = (thisParameters->associatedSurface()).associatedDetectorElement()->identify();
          } else {
            ATH_MSG_VERBOSE("Surface has no detector element ID, skip it");
            if(thisParameters->associatedSurface().type()==Trk::SurfaceType::Perigee){
              startParameters = std::move(thisParameters);
            }
            continue;
          }
 
          // check if it is Si or Pixel
          if (!(m_atlasId->is_pixel(id2) || m_atlasId->is_sct(id2))) {
            ATH_MSG_VERBOSE("Surface is not Pixel or SCT, stop loop over parameters in this step");
            // for collisions, we want to stop at the first trt measurement; whereas for cosmics not
            // here we will have trt measurements on the track before the first si measurement!
            if(thisParameters->associatedSurface().type()==Trk::SurfaceType::Perigee){
              startParameters = std::move(thisParameters);
            }
            if (m_cosmic) continue;
            else break;
          }
 
          // see if this surface is in the list
          std::map<const Identifier, const Trk::TrackStateOnSurface*>::iterator iTSOS = mapOfHits.find(id2);
 
          if (iTSOS == mapOfHits.end() && !foundFirst) {
            ATH_MSG_VERBOSE("Si surface before first Si measurement, skip it and continue");
            continue;
          }
 
          // this is a measurement on the track ?
          if (iTSOS != mapOfHits.end()) {
            if (!foundFirst && !(*iterTSOS)->type(Trk::TrackStateOnSurface::Outlier)) {
              ATH_MSG_VERBOSE("Found first Si measurement !");
              foundFirst = true;
            }
 
            // is this a surface which might have a better prediction ?
            if (iTSOS->second->trackParameters()) {
              ATH_MSG_VERBOSE("Found track parameter on Si surface, take it");
              startParameters.reset( iTSOS->second->trackParameters()->clone());
            } else {
              ATH_MSG_VERBOSE("No parameter, take extrapolation");
              startParameters.reset(thisParameters->clone());
            }
          }
 
          // add surface, test insert !
          std::pair<const Trk::TrackParameters*,const bool> trackparampair (thisParameters.release(),true);
          if (mapOfPredictions.insert(std::pair<const Identifier, std::pair<const Trk::TrackParameters*,const bool> >(id2,trackparampair)).second) {
            ATH_MSG_VERBOSE("Added Si surface to mapOfPredictions");
          } else {
            ATH_MSG_VERBOSE("Had this, it is a double, skipped");
            delete trackparampair.first;
            trackparampair.first=nullptr;
          }
        }
 
        if (!(m_atlasId->is_pixel(id) || m_atlasId->is_sct(id))) {
          ATH_MSG_VERBOSE("Target was no longer an Si element, break loop");
          break;
        }
 
      }
    }
    if ((*iterTSOS)->type(Trk::TrackStateOnSurface::Measurement) && !(*iterTSOS)->type(Trk::TrackStateOnSurface::Outlier)) measno++;
    if (measno==nmeas) break; // don't count holes after last measurement, this is done below...
  }
 
 
  // if last extrapolation is not TRT:
  // - if countDeadModulesAfterLastHit (robustness): search for dead modules
  // - if cosmics or extendedListOfHoles: search for more holes after the last measurement (and also dead modules)
  if (!m_atlasId->is_trt(id) && (m_countDeadModulesAfterLastHit || m_extendedListOfHoles || m_cosmic)) {
    ATH_MSG_DEBUG("Search for dead modules after the last Si measurement");
    if (m_extendedListOfHoles || m_cosmic) ATH_MSG_DEBUG("Search for extended list of holes");
 
    auto cylinderBounds = std::make_shared<Trk::CylinderVolumeBounds>(560, 2750);
    // don't delete the cylinderBounds -> it's taken care of by Trk::VOlume (see Trk::SharedObject)
    Trk::Volume* boundaryVol = new Trk::Volume(nullptr, cylinderBounds);
    // extrapolate this parameter blindly to search for more Si hits (not very fast, I know)
 
    std::vector<std::unique_ptr<Trk::TrackParameters> > paramList =
      m_extrapolator->extrapolateBlindly(ctx,
                                         *startParameters,
                                         Trk::alongMomentum,
                                         false, partHyp,
                                         boundaryVol);
    if (paramList.empty()) {
      ATH_MSG_VERBOSE("--> Did not manage to extrapolate to another surface, break loop");
    } else {
      ATH_MSG_VERBOSE("Number of parameters in this step: " << paramList.size());
 
      // loop over the predictions and analyze them
      for (std::unique_ptr<Trk::TrackParameters>& thisParameter : paramList) {
        // check if surface has identifer !
        Identifier id2;
        if (thisParameter->associatedSurface().associatedDetectorElement() != nullptr &&
            thisParameter->associatedSurface().associatedDetectorElement()->identify() != 0) {
          id2 = thisParameter->associatedSurface().associatedDetectorElement()->identify();
 
          // check if it is Si or Pixel
          if (!(m_atlasId->is_pixel(id2) || m_atlasId->is_sct(id2))) {
            ATH_MSG_VERBOSE("Surface is not Pixel or SCT, stop loop over parameters in this step");
            break;
          }
 
          // JEF: bool parameter in trackparampair: flag weather this hit should be considered as hole; if
          // not, just cound dead modules
          std::pair<Trk::TrackParameters*, const bool> trackparampair(
            thisParameter.release(), m_extendedListOfHoles || m_cosmic);
          if (mapOfPredictions
                .insert(std::pair<const Identifier, std::pair<const Trk::TrackParameters*, const bool>>(
                  id2, trackparampair))
                .second) {
            thisParameter.reset(trackparampair.first->clone());
            ATH_MSG_VERBOSE("Added Si surface");
          } else {
            thisParameter.reset(trackparampair.first);
            ATH_MSG_VERBOSE("Had this, it is a double, skipped");
          }
        } else {
          ATH_MSG_VERBOSE("Surface has no detector element ID, skip it");
        }
 
        // keep going...
        startParameters = std::move(thisParameter);
      }
    }
 
    // gotta clean up ...
    delete boundaryVol;
    boundaryVol = nullptr;
    //delete cylinderBounds; cylinderBounds = 0; // Till : don't delete this guy, it's deleted already when the boundaryVol gets deleted !
  }
 
  ATH_MSG_DEBUG("Number of Predictions found: " << mapOfPredictions.size());
  return true;
 
}
 
//=================================================================================================================
void InDet::InDetTrackHoleSearchTool::performHoleSearchStepWise(std::map<const Identifier, const Trk::TrackStateOnSurface*>& mapOfHits,
                                                                std::map<const Identifier, std::pair<const Trk::TrackParameters*, const bool> >& mapOfPredictions,
                                                                std::vector<int>* information,
                                                                std::vector<const Trk::TrackStateOnSurface*>* listOfHoles) const {
 
  // counters to steer first/last Si hit logic
  unsigned int foundTSOS = 0;
  int  PixelHoles = 0, SctHoles = 0, SctDoubleHoles = 0, PixelDead=0, SctDead=0;
  std::set<Identifier> SctHoleIds;
 
  ATH_MSG_DEBUG("Start iteration");
  ATH_MSG_DEBUG("Number of hits+outliers: " << mapOfHits.size() << " and predicted parameters:" << mapOfPredictions.size());
 
  for (std::map<const Identifier,std::pair<const Trk::TrackParameters*,const bool> >::const_iterator it = mapOfPredictions.begin();
       it != mapOfPredictions.end(); ++it) {
 
    const Trk::TrackParameters* nextParameters = (it->second).first;
 
    Identifier id = nextParameters->associatedSurface().associatedDetectorElement()->identify();
 
    // search for this ID in the list
    std::map<const Identifier, const Trk::TrackStateOnSurface*>::iterator iTSOS = mapOfHits.find(id);
 
    if (iTSOS == mapOfHits.end()) {
      switch (m_boundaryCheckTool->boundaryCheck(*nextParameters)) {
        case Trk::BoundaryCheckResult::DeadElement:
          if (m_atlasId->is_pixel(id)) {
 
            ATH_MSG_VERBOSE("Found element is a dead pixel module, add it to the list and continue");
            ++PixelDead;
          } else if (m_atlasId->is_sct(id)) {
 
            ATH_MSG_VERBOSE("Found element is a dead SCT module, add it to the list and continue");
            ++SctDead;
          }
        case Trk::BoundaryCheckResult::Insensitive:
        case Trk::BoundaryCheckResult::Outside:
        case Trk::BoundaryCheckResult::OnEdge:
        case Trk::BoundaryCheckResult::Error:
          continue;
        case Trk::BoundaryCheckResult::Candidate:
          break;
      }
 
      // increment tmp counters only if this detElement should be considered for a proper holesearch
      // this info is the boolean in the (mapOfPredictions->second).second
      if (((it->second).second)) {
        if (m_atlasId->is_pixel(id)) {
          ATH_MSG_VERBOSE("Found element is a Pixel hole, add it to the list and continue");
          ++PixelHoles;
        } else if (m_atlasId->is_sct(id)) {
          ATH_MSG_VERBOSE("Found element is a SCT hole, add it to the list and continue");
          ++SctHoles;
 
          // check double sct
          // obtain backside of SCT module
          const InDetDD::SiDetectorElement* thisElement =
            dynamic_cast<const InDetDD::SiDetectorElement *> (nextParameters->associatedSurface().associatedDetectorElement());
          if (!thisElement) {
            ATH_MSG_ERROR ("cast to SiDetectorElement failed, should never happen !");
            continue;
          }
 
          const Identifier otherId = thisElement->otherSide()->identify();
          // loop over holes and look for the other one
          if (SctHoleIds.find(otherId) != SctHoleIds.end()) {
            ATH_MSG_VERBOSE("Found an SCT double hole !!!");
            ++SctDoubleHoles;
          }
          // keep this id for double side check
          SctHoleIds.insert(id);
 
        }
        // add to tmp list of holes
        if (listOfHoles) listOfHoles->push_back(createHoleTSOS(nextParameters));
        continue;
      } else {
        continue;
      }
    } // end (iTSOS == mapOfHits.end())
 
    if (iTSOS->second->type(Trk::TrackStateOnSurface::Outlier)) {
      ++foundTSOS;
      ATH_MSG_VERBOSE("Found TSOS is an outlier, not a hole, skip it and continue");
      // remove this one from the map
      mapOfHits.erase(iTSOS);
      continue;
    }
 
    if (iTSOS->second->type(Trk::TrackStateOnSurface::Measurement)) {
      ++foundTSOS;
      ATH_MSG_VERBOSE("Found TSOS is a measurement, continue");
      // remove this one from the map
      mapOfHits.erase(iTSOS);
      continue;
    }
  } // end of loop
 
  ATH_MSG_DEBUG("==> Total number of holes found: "
                << PixelHoles << " Pixel holes, "
                << SctHoles << " Sct holes, "
                << SctDoubleHoles << " Double holes");
 
  if (listOfHoles) ATH_MSG_DEBUG("==> Size of listOfHoles: " << listOfHoles->size());
 
  if (!mapOfHits.empty()) {
    int ioutliers = 0, imeasurements = 0;
    for (std::map<const Identifier, const Trk::TrackStateOnSurface*>::const_iterator iter = mapOfHits.begin();
         iter != mapOfHits.end(); ++iter) {
      if (iter->second->type(Trk::TrackStateOnSurface::Outlier)) ++ioutliers;
      else if (iter->second->type(Trk::TrackStateOnSurface::Measurement)) ++imeasurements;
      else ATH_MSG_ERROR("Found wrong TSOS in map !!!");
    }
 
    if (imeasurements > 0) {
      if (PixelHoles+SctHoles+SctDoubleHoles > 0) {
        ATH_MSG_DEBUG("Not all measurements found, but holes. Left measurements: "
                      << imeasurements << " outliers: " << ioutliers << " found: " << foundTSOS
                      << " Pixel holes: " << PixelHoles << " Sct holes: " << SctHoles
                      << " Double holes: " << SctDoubleHoles);
      } else {
        ATH_MSG_DEBUG("Problem ? Not all measurements found. Left measurements: "
                      << imeasurements << " outliers: " << ioutliers << " found: " << foundTSOS);
      }
    }
  }
 
  // update information and return
  if (information) {
    (*information)[Trk::numberOfPixelHoles]       = PixelHoles;
    (*information)[Trk::numberOfSCTHoles]         = SctHoles;
    (*information)[Trk::numberOfSCTDoubleHoles]   = SctDoubleHoles;
    (*information)[Trk::numberOfPixelDeadSensors] = PixelDead;
    (*information)[Trk::numberOfSCTDeadSensors]   = SctDead;
  }
 
  }
 
// ====================================================================================================================
const Trk::TrackStateOnSurface* InDet::InDetTrackHoleSearchTool::createHoleTSOS(const Trk::TrackParameters* trackPar) {
  std::bitset<Trk::TrackStateOnSurface::NumberOfTrackStateOnSurfaceTypes> typePattern;
  typePattern.set(Trk::TrackStateOnSurface::Hole);
  const Trk::TrackStateOnSurface* tsos = new Trk::TrackStateOnSurface(nullptr,trackPar->uniqueClone(),nullptr,typePattern);
  return tsos;
}
 
// ====================================================================================================================
const Trk::Track*  InDet::InDetTrackHoleSearchTool::addHolesToTrack(const Trk::Track& oldTrack,
                                                                    std::vector<const Trk::TrackStateOnSurface*>* listOfHoles) const {
  auto trackTSOS = std::make_unique<Trk::TrackStates>();
 
  // get states from track
  for (const auto *it : *oldTrack.trackStateOnSurfaces()) {
    // veto old holes
    if (!it->type(Trk::TrackStateOnSurface::Hole)) trackTSOS->push_back(new Trk::TrackStateOnSurface(*it));
  }
 
  // if we have no holes on the old track and no holes found by search, then we just copy the track
  if (oldTrack.trackStateOnSurfaces()->size() == trackTSOS->size() && listOfHoles->empty()) {
    ATH_MSG_DEBUG("No holes on track, copy input track to new track");
    // create copy of track
    const Trk::Track* newTrack = new Trk::Track(
      oldTrack.info(),
      std::move(trackTSOS),
      oldTrack.fitQuality() ? oldTrack.fitQuality()->uniqueClone() : nullptr);
    return newTrack;
  }
 
  // add new holes
  for (const auto *listOfHole : *listOfHoles) {
    trackTSOS->push_back(listOfHole);
  }
 
  // sort
  const Trk::TrackParameters* perigee = oldTrack.perigeeParameters();
  if (!perigee) perigee = (*(oldTrack.trackStateOnSurfaces()->begin()))->trackParameters();
 
  if (perigee) {
 
    Trk::TrackStateOnSurfaceComparisonFunction CompFunc(perigee->momentum());
 
    // we always have to sort holes in
    // if (!is_sorted(trackTSOS->begin(),trackTSOS->end(), CompFunc)) {
 
    if (fabs(perigee->parameters()[Trk::qOverP]) > 0.002) {
      /* invest n*(logN)**2 sorting time for lowPt, coping with a possibly
         not 100% transitive comparison functor.
      */
      ATH_MSG_DEBUG("sorting vector with stable_sort ");
      std::stable_sort(trackTSOS->begin(), trackTSOS->end(), CompFunc);
    } else {
      trackTSOS->sort(CompFunc); // respects DV object ownership
    }
 
  }
 
  // create copy of track
  const Trk::Track* newTrack = new Trk::Track(
    oldTrack.info(),
    std::move(trackTSOS),
    oldTrack.fitQuality() ? oldTrack.fitQuality()->uniqueClone() : nullptr);
 
  return newTrack;
}