MdtDeadNoisyUtils.h

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/*
   Copyright (C) 2002-2026 CERN for the benefit of the ATLAS collaboration
 */
 
#ifndef dqutilsMdtDeadNoisy_h
#define dqutilsMdtDeadNoisy_h
 
#include <vector>
#include <string>
#include <sstream>
#include <iostream>
#include <fstream>
#include <stdio.h>
 
#include <TH1F.h>
#include <TCanvas.h>
 
namespace dqutils_mdtdeadnoisy {
  struct TubeRange {
    TubeRange(int a, int b) {x1 = a; x2 = b;}
    bool InRange(int x) {
      if ((x >= x1) && (x <= x2)) return true;
 
      return false;
    }
 
    int x1;
    int x2;
  };
 
  double sqr(double x);
  void displayList(std::vector<int>& v);
  void displayList(std::vector<int>& v, std::ofstream& outputfile);
  void getDeadList(TH1F* h, std::vector<int>& v);
  bool find(std::vector<int>& v, unsigned int x);
  void getSurelyDeadList(TH1F* h, std::vector<int>& v, std::vector<int>& betweenlist);
  void getNotBetweenList(std::vector<int>& v, std::vector<int>& surely_v, std::vector<int>& betweenlist);
  void getNotMasked(std::vector<int>& v, TH1F* h);
  void getNotInDeadML(std::vector<int>& v, std::vector<int>& deadML_v, const std::string& hardware_name, int totalTubes);
  void getNotInDeadLayer(std::vector<int>& v, std::vector<int>& deadLayer_v, const std::string& hardware_name,
                         int totalTubes);
  void getNotInDeadMezz(std::vector<int>& v, std::vector<int>& deadMezz_v, const std::string& hardware_name,
                        int totalTubes);
  void getAllBins(TH1F* h, std::vector<int>& v);
  void getAllBinsInRange(TH1F* h, std::vector<int>& v, int x1, int x2);
  void getAllBinsInRangeBelowCutoff(TH1F* h, std::vector<int>& v, int crustCutoff, int x1, int x2);
  void getAllUnmaskedBinsInRangeBelowCrustCutoff(TH1F* h, std::vector<int>& v, int crustCutoff, int x1, int x2);
  void getBins(TH1F* h, std::vector<int>& indices, std::vector<int>& content);
  void removeZeros(std::vector<int>& v);
  void getAllTubes(TH1F* h, std::vector<int>& v);
  void getNonEmptyBins(TH1F* h, std::vector<int>& v);
  void getNonEmptyTubes(TH1F* h, std::vector<int>& v);
  template <class T>
  double getMean(std::vector<T>& v);
  double getMean_WithCut(std::vector<int>& v, double cut);
  void getNoBetweens(TH1F* h, std::vector<int>& no_dead, std::vector<int>& no_betweens, std::vector<int>& betweenlist,
                     float minBinContent);
  void getNoBetweens_middle(std::vector<int> no_betweens, std::vector<int>& no_betweens_middle);
  void getNoBetweens_lowmiddle(std::vector<int> no_betweens, std::vector<int>& no_betweens_lowmiddle);
  void getNoBetweens_middle_aggressive(std::vector<int> no_betweens, std::vector<int>& no_betweens_middle_aggressive);
  void getNoBetweens_middle_semiaggressive(std::vector<int> no_betweens,
                                           std::vector<int>& no_betweens_middle_aggressive);
  void getNoBetweens_lowmiddle_aggressive(std::vector<int> no_betweens,
                                          std::vector<int>& no_betweens_lowmiddle_aggressive);
  void getNoBetweens_highmiddle_aggressive(std::vector<int> no_betweens,
                                           std::vector<int>& no_betweens_lowmiddle_aggressive);
  double getStandardDevFromMean(std::vector<int>& v, double mean);
  double getStandardDevFromMean_neg(std::vector<int>& v, double mean);
  double getStandardDevFromMean_pos(std::vector<int>& v, double mean);
  void getNoisyList(TH1F* h, std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_middle_aggressive,
                    double num_std_dev, std::vector<int>& noisylist);
  void getNoisyList2(TH1F* h, std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_middle_aggressive,
                     double num_pct, std::vector<int>& noisylist);
  void getIneffList(TH1F* h, std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_lowmiddle_aggressive,
                    double num_std_dev, std::vector<int>& inefflist);
  void getIneffList(TH1F* h, std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_lowmiddle_aggressive,
                    double num_std_dev_1, double num_std_dev_2, std::vector<int>& inefflist);
  void getIneffList2(TH1F* h, std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_lowmiddle_aggressive,
                     double num_pct, std::vector<int>& inefflist);
  void getIneffList2(TH1F* h, std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_lowmiddle_aggressive,
                     double num_pct_1, double num_pct_2, std::vector<int>& inefflist);
  void getIneffList2(std::vector<int>& indices, TH1F* h, std::vector<int>& no_betweens_middle,
                     std::vector<int>& no_betweens_lowmiddle_aggressive, double num_pct, std::vector<int>& inefflist);
  bool validityCheckDead(std::vector<int>& no_betweens_middle, std::vector<int>& no_betweens_middle_aggressive);
  bool validityCheckNoise(std::vector<int>& no_betweens_middle,
                          std::vector<int>& no_betweens_middle_aggressive /*, int max*/); //max parameter is not
                                                                                          // currently used
  void getNonEmptyNonNoisyTubes(TH1F* h_tube_fornoise, TH1F* h_tube, std::vector<int>& non_dead_non_noisy);
  void removeNonContiguous(std::vector<int>& betweenlist, unsigned int sz);
  void CatalogNoisyEff(TH1F* h_tube_bkd, TH1F* h_tube_fornoise, TH1F* num, TH1F* den, int nTriggers,
                       TH1F* EffVSNoise_num, TH1F* EffVSNoise_den, TH1F* EffVSNoise_ADCCut_num,
                       TH1F* EffVSNoise_ADCCut_den, TH1F* EffVSBkd_num, TH1F* EffVSBkd_den);
  std::vector<int> GetNoisyTubes(TH1F* h_tube_fornoise, int nTriggers, float frequency);//Simply determine noisy tubes
                                                                                        // from freq.
  std::vector<int> GetNoisyTubes(TH1F* h_tube_fornoise, TH1F* h_tube, const std::string& chamber, int& validity);
  std::vector<int> GetNoisyTubes_WithoutForNoise(TH1F* h_tube, int& validity, const std::string& chamber);
  //std::vector<int> GetDeadTubes( TH1F* h_tube_fornoise, TH1F* h_tube, std::string chamber);
  std::vector<int> GetDeadTubes(TH1F* h_tube, int& validity, std::vector<int>& deadML_v, std::vector<int>& deadLayer_v,
                                std::vector<int>& deadMezz_v);
  //std::vector<int> GetMaskedTubesForDead( TH1F* h_tube_fornoise, TH1F* h_tube, std::string chamber);
  std::vector<int> GetMaskedTubesForDead(TH1F* h_tube);
  //std::vector<int> GetMaskedTubesForNoisy( TH1F* h_tube_fornoise, TH1F* h_tube, std::string chamber);
  std::vector<int> GetMaskedTubesForNoisy(TH1F* h_tube_fornoise);
  double GetMeanFromHist(TH1F* h_tube);
  double GetStandardDevFromHist(TH1F* h_tube, double mean);
  int getLastTubeInLayer(int& firstTubeInLayer, const std::string& hardware_name, int totalTubes);
  std::vector<TubeRange> getLayerRanges(const std::string& hardware_name, int totalTubes);
  int getLastTubeInML(int& firstTubeInML, const std::string& hardware_name, int totalTubes);
  std::vector<TubeRange> getMLRanges(const std::string& hardware_name, int totalTubes);
  std::vector<TubeRange> getMezzRanges(const std::string& hardware_name, int totalTubes, int& groupsPerLayer);
  int Get_ML_of_Mezz(int& mezz, const std::string& hardware_name, int totalTubes);
  int Get_ML_of_Mezz_degenerate(int& mezz, const std::string& hardware_name, int totalTubes);
  std::vector<int> /*void*/ FindDeadMezz(TH1F* h_tube, const std::string& hardware_name, std::vector<int>& deadML_v);
  std::vector<int> /*void*/ FindDeadLayer(TH1F* h_tube, const std::string& hardware_name, std::vector<int>& deadML_v);
  std::vector<int> /*void*/ FindDeadML(TH1F* h_tube, const std::string& hardware_name);
  int GetNumML(const std::string& hardware_name);
  int GetNumLayersPerML(const std::string& hardware_name);
  int GetNumTubesPerMezz(const std::string& hardware_name, int mezz);//For Getting total tube count
  //global layer i.e. 5 instead of ML2 layer 2
  int GetNumTubesPerML(const std::string& hardware_name, int layer, int TotalTubes);//For Getting total tube count
  int GetNumTubesPerLayer(const std::string& hardware_name, int ML, int TotalTubes);//For Getting total tube count
  int Get_ML_of_Layer(int& layer, const std::string& hardware_name);
  int Get_ML_of_Tube(int& tubeID, const std::string& hardware_name, int totalTubes);
  int Get_Layer_of_Tube(int& tubeID, const std::string& hardware_name, int totalTubes);
  int Get_Mezz_of_Tube(int& tubeID, const std::string& hardware_name /*, int totalTubes*/,
                       std::vector<TubeRange>& tubeRanges, int groupsPerLayer);
  int GetNumNonMaskedTubes(TH1F* h_tube);
  int GetNumMezz(TH1F* h_tube);
  bool AinB(int A, std::vector<int>& B);
  bool AinB(int A, const std::vector<int>* B);
 
  //For dumping pdf
  void FillPDF(const std::string& inFilename, TH1F* hDead, TH1F* hNoise, TCanvas* c,
               const std::vector<int>* deadTubes, const std::vector<int>* deadASD, const std::vector<int>* deadMEZZ,
               const std::vector<int>* deadLayer, const std::vector<int>* deadML,
               const std::vector<int>* noisyTubes, const std::vector<int>* noisyASD, const std::vector<int>* noisyMEZZ,
               const std::vector<int>* noisyLayer, const std::vector<int>* noisyML,
               int deadTubesChamberValidity, int noisyTubesChamberValidity,
               bool draw_Mezz_L_ML_guidlines, bool draw_mean, bool draw_masked_tubes, bool separate_dead_noisy_histos,
               bool draw_validity_message, bool draw_histo_if_nothing_to_report);
} // end namespace
 
#endif