ATLAS Offline Software
LArNewCalib_Delay_OFC_Cali.py
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1 #!/usr/bin/env python
2 #
3 # Copyright (C) 2002-2023 CERN for the benefit of the ATLAS collaboration
4 #
5 
6 if __name__=='__main__':
7 
8  import os,sys
9  import argparse
10 
11  # now process the CL options and assign defaults
12  parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter)
13  #parser.add_argument('-r','--runlist', dest='runlist', default=RunNumberList, nargs='+', help='Run numbers string list', type=str)
14  parser.add_argument('-r','--run', dest='run', default='00408918', help='Run number string as in input filename', type=str)
15  parser.add_argument('-g','--gain', dest='gain', default="MEDIUM", help='Gain string', type=str)
16  parser.add_argument('-p','--partition', dest='partition', default="Em", help='Data taking partition string', type=str)
17  parser.add_argument('-f','--fileprefix', dest='fprefix', default="data24_calib", help='File prefix string', type=str)
18  parser.add_argument('-i','--indirprefix', dest='dprefix', default="/eos/atlas/atlastier0/rucio/", help='Input directory prefix string', type=str)
19  parser.add_argument('-d','--indir', dest='indir', default="", help='Full input dir string', type=str)
20  parser.add_argument('-t','--trigger', dest='trig', default='calibration_', help='Trigger string in filename', type=str)
21  parser.add_argument('-o','--outrwaveprefix', dest='outrwaveprefix', default="LArCaliWave", help='Prefix of CaliWave output root filename', type=str)
22  parser.add_argument('-l','--outpprefix', dest='outpprefix', default="LArCaliWave_OFC_Cali", help='Prefix of output pool filename', type=str)
23  parser.add_argument('-j','--outrofcprefix', dest='outrofcprefix', default="LArOFCCali", help='Prefix of output Cali OFC root filename', type=str)
24  parser.add_argument('-e','--outrdir', dest='outrdir', default="/eos/atlas/atlascerngroupdisk/det-larg/Temp/Weekly/ntuples", help='Output root file directory', type=str)
25  parser.add_argument('-k','--outpdir', dest='outpdir', default="/eos/atlas/atlascerngroupdisk/det-larg/Temp/Weekly/poolFiles", help='Output pool file directory', type=str)
26  parser.add_argument('-u','--insqlite', dest='insql', default="mysql.db", help='Input sqlite file with pedestals, in pool output dir.', type=str)
27  parser.add_argument('-n','--outsqlite', dest='outsql', default="mysql_delay.db", help='Output sqlite file, in pool output dir.', type=str)
28  parser.add_argument('-m','--subdet', dest='subdet', default="EMB", help='Subdetector, EMB, EMEC, HEC, FCAL or HECFCAL', type=str)
29  parser.add_argument('-s','--side', dest='side', default="C", help='Detector side empty (means both), C or A', type=str)
30  parser.add_argument('-c','--isSC', dest='supercells', default=False, action="store_true", help='is SC data ?')
31  parser.add_argument('-a','--isRawdata', dest='rawdata', default=False, action="store_true", help='is raw data ?')
32  parser.add_argument('-x','--ignoreBarrel', dest='ignoreB', default=False, action="store_true", help='ignore Barrel channels ?')
33  parser.add_argument('-v','--ignoreEndcap', dest='ignoreE', default=False, action="store_true", help='ignore Endcap channels ?')
34  parser.add_argument('-b','--badchansqlite', dest='badsql', default="SnapshotBadChannel.db", help='Output sqlite file, in pool output dir.', type=str)
35  parser.add_argument('--FW6', dest='fw6', default=False, help='Is it for fw v. 6', action='store_true')
36  parser.add_argument('--EMF', dest='emf', default=False, help='Is it for EMF', action='store_true')
37  parser.add_argument('--pulseAll', dest='pulseall', default=False, help='Is it PulseAll run ?', action='store_true')
38 
39  args = parser.parse_args()
40  if help in args and args.help is not None and args.help:
41  parser.print_help()
42  sys.exit(0)
43 
44  for _, value in args._get_kwargs():
45  if value is not None:
46  print(value)
47 
48  if len(args.run) < 8:
49  args.run = args.run.zfill(8)
50 
51  # now set flags according parsed options
52  if args.indir != "":
53  InputDir = args.indir
54  else:
55  gain=args.gain.lower().capitalize()
56  if not args.supercells:
57  partstr = args.partition
58  else:
59  partstr = args.partition+"-DT"
60  if args.rawdata:
61  partstr += "-RawData"
62  # here - add optional nsamples
63  InputDir = args.dprefix+args.fprefix+"/calibration_LArElec-Delay-32s-"+gain+"-"+partstr+"/"+args.run+"/"+args.fprefix+"."+args.run+".calibration_LArElec-Delay-32s-"+gain+"-"+partstr+".daq.RAW/"
64 
65  #Import the configution-method we want to use (here: Pedestal and AutoCorr)
66  from LArCalibProcessing.LArCalib_Delay_OFCCaliConfig import LArDelay_OFCCaliCfg
67 
68  #Import the MainServices (boilerplate)
69  from AthenaConfiguration.MainServicesConfig import MainServicesCfg
70 
71  #Import the flag-container that is the arguemnt to the configuration methods
72  from AthenaConfiguration.AllConfigFlags import initConfigFlags
73  from LArCalibProcessing.LArCalibConfigFlags import addLArCalibFlags
74  flags=initConfigFlags()
75  addLArCalibFlags(flags, args.supercells)
76 
77  #Now we set the flags as required for this particular job:
78  #The following flags help finding the input bytestream files:
79  flags.LArCalib.Input.Dir = InputDir
80  flags.LArCalib.Input.Type = args.trig
81  flags.LArCalib.Input.RunNumbers = [int(args.run),]
82  flags.LArCalib.Input.Database = args.outpdir + "/" +args.insql
83  flags.LArCalib.Input.isRawData = args.rawdata
84  gainNumMap={"HIGH":0,"MEDIUM":1,"LOW":2}
85  flags.LArCalib.Gain=gainNumMap[args.gain.upper()]
86 
87 
88  # Input files
89  flags.Input.Files=flags.LArCalib.Input.Files
90  #Print the input files we found
91  print ("Input files to be processed:")
92  for f in flags.Input.Files:
93  print (f)
94 
95  if len(flags.Input.Files) == 0 :
96  print("Unable to find any input files. Please check the input directory:",InputDir)
97  sys.exit(0)
98 
99  #Some configs depend on the sub-calo in question
100  #(sets also the preselection of LArRawCalibDataReadingAlg)
101  if not flags.LArCalib.isSC:
102  if args.subdet == 'EMB' or args.subdet == 'EMEC':
103  flags.LArCalib.Input.SubDet="EM"
104  elif args.subdet:
105  flags.LArCalib.Input.SubDet=args.subdet
106 
107  if not args.side:
108  flags.LArCalib.Preselection.Side = [0,1]
109  elif args.side == "C":
110  flags.LArCalib.Preselection.Side = [0]
111  elif args.side == "A":
112  flags.LArCalib.Preselection.Side = [1]
113  else:
114  print("unknown side ",args.side)
115  sys.exit(-1)
116 
117  if args.subdet != "EM":
118  if args.subdet == 'EMB':
119  flags.LArCalib.Preselection.BEC = [0]
120  else:
121  flags.LArCalib.Preselection.BEC = [1]
122 
123  if args.subdet == 'FCAL':
124  flags.LArCalib.Preselection.FT = [6]
125  elif args.subdet == 'HEC':
126  flags.LArCalib.Preselection.FT = [3,10,16,22]
127  elif args.subdet == 'HECFCAL':
128  flags.LArCalib.Preselection.FT = [3,6,10,16,22]
129 
130  #Configure the Bad-Channel database we are reading
131  #(the AP typically uses a snapshot in an sqlite file
132 
133  if args.badsql.startswith("/"):
134  flags.LArCalib.BadChannelDB = args.badsql
135  else:
136  flags.LArCalib.BadChannelDB = args.outpdir + "/" + args.badsql
137 
138  #Output of this job:
139  OutputCaliWaveRootFileName = args.outrwaveprefix + "_" + args.run
140  OutputPoolFileName = args.outpprefix + "_" + args.run
141  OutputOFCCaliRootFileName = args.outrofcprefix + "_" + args.run
142 
143  if args.subdet != "" and not flags.LArCalib.isSC:
144  OutputCaliWaveRootFileName += "_"+args.subdet
145  OutputPoolFileName += "_"+args.subdet
146  OutputOFCCaliRootFileName += "_"+args.subdet
147 
148  if flags.LArCalib.Input.SubDet=="EM":
149  OutputCaliWaveRootFileName += args.side
150  OutputPoolFileName += args.side
151  OutputOFCCaliRootFileName += args.side
152 
153  OutputCaliWaveRootFileName += ".root"
154  OutputPoolFileName += ".pool.root"
155  OutputOFCCaliRootFileName += ".root"
156 
157  flags.LArCalib.Output.ROOTFile = args.outrdir + "/" + OutputCaliWaveRootFileName
158  flags.LArCalib.Output.POOLFile = args.outpdir + "/" + OutputPoolFileName
159  flags.LArCalib.Output.ROOTFile2 = args.outrdir + "/" + OutputOFCCaliRootFileName
160  if args.outsql.startswith("/"):
161  flags.IOVDb.DBConnection="sqlite://;schema=" + args.outsql +";dbname=CONDBR2"
162  else:
163  flags.IOVDb.DBConnection="sqlite://;schema="+args.outpdir + "/" + args.outsql +";dbname=CONDBR2"
164 
165  #The global tag we are working with
166  flags.IOVDb.GlobalTag = "LARCALIB-RUN2-00"
167 
168  #validation not working for SC because no reference in OFL DB
169  if args.supercells:
170  flags.LArCalib.doValidation=False
171  if args.pulseall:
172  flags.LArCalib.CaliWave.Nsteps=1
173  flags.LArCalib.doOFCCali=False
174 
175  #Other potentially useful flags-settings:
176 
177  # patterns file searching
178  if args.rawdata:
179  if args.emf:
180  pdir='/afs/cern.ch/user/l/lardaq/public/detlar/athena/P1CalibrationProcessing/run/Patterns/EMF/EMF_Oct2024/Delay/emf/'
181  pfile = pdir+args.partition+'/parameters.dat'
182  else:
183  pdir='/afs/cern.ch/user/l/lardaq/public/detlar/athena/P1CalibrationProcessing/run/Patterns/P1/'
184  if args.supercells:
185  pdir += 'LatomeRuns/'
186  if 'Emec' in args.partition:
187  pfile = pdir + 'emec-std/SC_HighDelay/parameters.dat'
188  else:
189  pfile = pdir + 'barrel/Delay_' + args.partition[:-4] + '/parameters.dat'
190 
191  else:
192  pdir += 'Delay/'
193  #FIXME create search also for main readout
194  pass
195 
196  flags.LArCalib.Input.paramsFile = pfile
197 
198  #Define the global output Level:
199  from AthenaCommon.Constants import INFO
200  flags.Exec.OutputLevel = INFO
201 
202  from AthenaConfiguration.Enums import LHCPeriod
203  flags.GeoModel.Run = LHCPeriod.Run3
204 
205  from AthenaConfiguration.TestDefaults import defaultGeometryTags
206  flags.GeoModel.AtlasVersion = defaultGeometryTags.RUN3
207 
208  if args.emf:
209  # additions for EMF
210  flags.IOVDb.SqliteInput="/afs/cern.ch/user/p/pavol/public/EMF_otherCond.db"
211  flags.IOVDb.SqliteFolders = ("/LAR/BadChannelsOfl/BadChannelsSC","/LAR/BadChannels/BadChannelsSC","/LAR/Identifier/OnOffIdMap","/LAR/BadChannelsOfl/MissingFEBs","/LAR/BadChannelsOfl/KnownMNBFEBs","/LAR/BadChannelsOfl/KnownBADFEBs","/LAR/BadChannelsOfl/BadChannels",)
212  flags.LArCalib.CorrectBadChannels=False
213  flags.LArCalib.doValidation=False
214 
215  flags.lock()
216  flags.dump(evaluate=True)
217 
218  cfg=MainServicesCfg(flags)
219 
220  cfg.merge(LArDelay_OFCCaliCfg(flags))
221 
222  # Switch on, in case some calib. board is failing:
223  # adding new patching, again needed in summer 2023
224  #if flags.LArCalib.CorrectBadChannels:
225  # if flags.LArCalib.doValidation:
226  # cfg.getEventAlgo("CaliWaveVal").PatchCBs=[0x3df70000]
227  #
228  # # block standard patching for this CB
229  # cfg.getEventAlgo("LArCaliWavePatch").DoNotPatchCBs=[0x3df70000]
230 
231  if args.fw6:
232  from IOVDbSvc.IOVDbSvcConfig import addOverride
233  cfg.merge(addOverride(flags,"/LAR/Identifier/LatomeMapping","LARIdentifierLatomeMapping-fw6"))
234 
235  if args.emf:
236  # additions for EMF
237  from IOVDbSvc.IOVDbSvcConfig import addOverride
238  cfg.merge(addOverride(flags,"/LAR/Identifier/LatomeMapping","LARIdentifierLatomeMapping-EMF"))
239  fldrs=cfg.getService("IOVDbSvc").Folders
240  for i in range(0, len(fldrs)):
241  if 'Align' in fldrs[i]: fldrs[i] += '<forceRunNumber>9999999</forceRunNumber>'
242 
243  # ignore some channels ?
244  if args.ignoreB:
245  if args.rawdata:
246  cfg.getEventAlgo("LArRawSCDataReadingAlg").LATOMEDecoder.IgnoreBarrelChannels=args.ignoreB
247  else:
248  cfg.getEventAlgo("LArRawSCCalibDataReadingAlg").LATOMEDecoder.IgnoreBarrelChannels=args.ignoreB
249  if args.ignoreE:
250  if args.rawdata:
251  cfg.getEventAlgo("LArRawSCDataReadingAlg").LATOMEDecoder.IgnoreEndcapChannels=args.ignoreE
252  else:
253  cfg.getEventAlgo("LArRawSCCalibDataReadingAlg").LATOMEDecoder.IgnoreEndcapChannels=args.ignoreE
254 
255  cfg.getService("IOVDbSvc").DBInstance=""
256 
257  cfg.getService("MessageSvc").defaultLimit=20000 #more messages
258 
259  #run the application
260  cfg.run()
261 
262  #build tag hierarchy in output sqlite file
263  import subprocess
264  cmdline = (['/afs/cern.ch/user/l/larcalib/LArDBTools/python/BuildTagHierarchy.py',args.outpdir + "/" + args.outsql , flags.IOVDb.GlobalTag])
265  print(cmdline)
266  try:
267  subprocess.run(cmdline, check=True)
268  except Exception as e:
269  print('Could not create tag hierarchy in output sqlite file !!!!')
270  sys.exit(-1)
271 
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